Calandrelli R - Search Results

1

Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells.

Calandrelli R, Wen X, Charles Richard JL, Luo Z, Nguyen TC, Chen CJ, Qi Z, Xue S, Chen W, Yan Z, Wu W, Zaleta-Rivera K, Hu R, Yu M, Wang Y, Li W, Ma J, Ren B, Zhong S. Calandrelli R, et al. Nat Commun. 2023 Oct 16;14(1):6519. doi: 10.1038/s41467-023-42274-7. Nat Commun. 2023. PMID: 37845234 Free PMC article.

2

Rainbow-Seq: Combining Cell Lineage Tracing with Single-Cell RNA Sequencing in Preimplantation Embryos.

Biase FH, Wu Q, Calandrelli R, Rivas-Astroza M, Zhou S, Chen Z, Zhong S. Biase FH, et al. Among authors: calandrelli r. iScience. 2018 Sep 28;7:16-29. doi: 10.1016/j.isci.2018.08.009. Epub 2018 Aug 16. iScience. 2018. PMID: 30267678 Free PMC article.

3

GITAR: An Open Source Tool for Analysis and Visualization of Hi-C Data.

Calandrelli R, Wu Q, Guan J, Zhong S. Calandrelli R, et al. Genomics Proteomics Bioinformatics. 2018 Oct;16(5):365-372. doi: 10.1016/j.gpb.2018.06.006. Epub 2018 Dec 13. Genomics Proteomics Bioinformatics. 2018. PMID: 30553884 Free PMC article.

4

Extracellular RNA in a single droplet of human serum reflects physiologic and disease states.

Zhou Z, Wu Q, Yan Z, Zheng H, Chen CJ, Liu Y, Qi Z, Calandrelli R, Chen Z, Chien S, Su HI, Zhong S. Zhou Z, et al. Among authors: calandrelli r. Proc Natl Acad Sci U S A. 2019 Sep 17;116(38):19200-19208. doi: 10.1073/pnas.1908252116. Epub 2019 Sep 3. Proc Natl Acad Sci U S A. 2019. PMID: 31481608 Free PMC article.

5

Reply to Hartl and Gao: Lack of between-batch difference in the distributions of measured extracellular RNA levels.

Zhou Z, Wu Q, Yan Z, Zheng H, Chen CJ, Liu Y, Qi Z, Calandrelli R, Chen Z, Chien S, Su HI, Zhong S. Zhou Z, et al. Among authors: calandrelli r. Proc Natl Acad Sci U S A. 2020 Jan 28;117(4):1851-1852. doi: 10.1073/pnas.1918079117. Epub 2020 Jan 21. Proc Natl Acad Sci U S A. 2020. PMID: 31964851 Free PMC article. No abstract available.

6

Reply to Verwilt et al.: Experimental evidence against DNA contamination in SILVER-seq.

Zhou Z, Wu Q, Yan Z, Zheng H, Chen CJ, Liu Y, Qi Z, Calandrelli R, Chen Z, Chien S, Su HI, Zhong S. Zhou Z, et al. Among authors: calandrelli r. Proc Natl Acad Sci U S A. 2020 Aug 11;117(32):18937-18938. doi: 10.1073/pnas.2008585117. Proc Natl Acad Sci U S A. 2020. PMID: 32788395 Free PMC article. No abstract available.

7

Stress-induced RNA-chromatin interactions promote endothelial dysfunction.

Calandrelli R, Xu L, Luo Y, Wu W, Fan X, Nguyen T, Chen CJ, Sriram K, Tang X, Burns AB, Natarajan R, Chen ZB, Zhong S. Calandrelli R, et al. Nat Commun. 2020 Oct 15;11(1):5211. doi: 10.1038/s41467-020-18957-w. Nat Commun. 2020. PMID: 33060583 Free PMC article.

8

Isolation and Profiling of Human Primary Mesenteric Arterial Endothelial Cells at the Transcriptome Level.

Malhi NK, Luo Y, Tang X, Sriram K, Calandrelli R, Zhong S, Chen ZB. Malhi NK, et al. Among authors: calandrelli r. J Vis Exp. 2022 Mar 14;(181):10.3791/63307. doi: 10.3791/63307. J Vis Exp. 2022. PMID: 35343966 Free PMC article.

9

PHGDH expression increases with progression of Alzheimer's disease pathology and symptoms.

Chen X, Calandrelli R, Girardini J, Yan Z, Tan Z, Xu X, Hiniker A, Zhong S. Chen X, et al. Among authors: calandrelli r. Cell Metab. 2022 May 3;34(5):651-653. doi: 10.1016/j.cmet.2022.02.008. Cell Metab. 2022. PMID: 35508105 Free PMC article.

10

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.

Dekker J, Alber F, Aufmkolk S, Beliveau BJ, Bruneau BG, Belmont AS, Bintu L, Boettiger A, Calandrelli R, Disteche CM, Gilbert DM, Gregor T, Hansen AS, Huang B, Huangfu D, Kalhor R, Leslie CS, Li W, Li Y, Ma J, Noble WS, Park PJ, Phillips-Cremins JE, Pollard KS, Rafelski SM, Ren B, Ruan Y, Shav-Tal Y, Shen Y, Shendure J, Shu X, Strambio-De-Castillia C, Vertii A, Zhang H, Zhong S. Dekker J, et al. Among authors: calandrelli r. Mol Cell. 2023 Aug 3;83(15):2624-2640. doi: 10.1016/j.molcel.2023.06.018. Epub 2023 Jul 6. Mol Cell. 2023. PMID: 37419111 Free PMC article. Review.

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