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Page 1
Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads.
Konanov DN, Babenko VV, Belova AM, Madan AG, Boldyreva DI, Glushenko OE, Butenko IO, Fedorov DE, Manolov AI, Krivonos DV, Lazarev VN, Govorun VM, Ilina EN. Konanov DN, et al. Among authors: boldyreva di. Bioinformatics. 2023 Nov 1;39(11):btad702. doi: 10.1093/bioinformatics/btad702. Bioinformatics. 2023. PMID: 37982752 Free PMC article.
16S rRNA gene sequencing data of the upper respiratory tract microbiome in the SARS-CoV-2 infected patients.
Galeeva J, Babenko V, Bakhtyev R, Baklaushev V, Balykova L, Bashkirov P, Bespyatykh J, Blagonravova A, Boldyreva D, Fedorov D, Gafurov I, Gaifullina R, Galova E, Gospodaryk A, Ilina E, Ivanov K, Kharlampieva D, Khromova P, Klimina K, Kolontarev K, Kolyshkina N, Koritsky A, Kuropatkin V, Lazarev V, Manolov A, Manuvera V, Matyushkina D, Morozov M, Moskaleva E, Musarova V, Ogarkov O, Orlova E, Pavlenko A, Petrova A, Pozhenko N, Pushkar D, Rumyantsev A, Rumyantsev S, Rumyantsev V, Rychkova L, Samoilov A, Shirokova I, Sinkov V, Solovieva S, Starikova E, Tikhonova P, Trifonova G, Troitsky A, Tulichev A, Udalov Y, Varizhuk A, Vasiliev A, Veselovsky V, Vereshchagin R, Volnukhin A, Yusubalieva G, Govorun V. Galeeva J, et al. Data Brief. 2022 Feb;40:107770. doi: 10.1016/j.dib.2021.107770. Epub 2021 Dec 29. Data Brief. 2022. PMID: 34977286 Free PMC article.
Sharp water column stratification with an extremely dense microbial population in a small meromictic lake, Trekhtzvetnoe.
Savvichev AS, Babenko VV, Lunina ON, Letarova MA, Boldyreva DI, Veslopolova EF, Demidenko NA, Kokryatskaya NM, Krasnova ED, Gaisin VA, Kostryukova ES, Gorlenko VM, Letarov AV. Savvichev AS, et al. Among authors: boldyreva di. Environ Microbiol. 2018 Oct;20(10):3784-3797. doi: 10.1111/1462-2920.14384. Epub 2018 Oct 5. Environ Microbiol. 2018. PMID: 30117254
Bacteroides vesicles promote functional alterations in the gut microbiota composition.
Shagaleeva OY, Kashatnikova DA, Kardonsky DA, Efimov BA, Ivanov VA, Smirnova SV, Evsiev SS, Zubkov EA, Abramova OV, Zorkina YA, Morozova AY, Vorobeva EA, Silantiev AS, Kolesnikova IV, Markelova MI, Olekhnovich EI, Morozov MD, Zoruk PY, Boldyreva DI, Kazakova VD, Vanyushkina AA, Chaplin AV, Grigoryeva TV, Zakharzhevskaya NB. Shagaleeva OY, et al. Among authors: boldyreva di. Microbiol Spectr. 2024 Nov 5;12(11):e0063624. doi: 10.1128/spectrum.00636-24. Epub 2024 Sep 30. Microbiol Spectr. 2024. PMID: 39345205 Free PMC article.
Effect of the consumption of brazzein and monellin, two recombinant sweet-tasting proteins, on rat gut microbiota.
Veselovsky VA, Boldyreva DI, Olekhnovich EI, Klimina KM, Babenko VV, Zakharevich NV, Larin AK, Morozov MD, Zoruk PY, Sergiev PV, Dontsova OA, Maev IV, Novik TS, Kotlobay AA, Lazarev VN, Lagarkova MA. Veselovsky VA, et al. Among authors: boldyreva di. Front Nutr. 2024 Mar 21;11:1362529. doi: 10.3389/fnut.2024.1362529. eCollection 2024. Front Nutr. 2024. PMID: 38577158 Free PMC article.
A hybrid pathway for self-sustained luminescence.
Palkina KA, Karataeva TA, Perfilov MM, Fakhranurova LI, Markina NM, Somermeyer LG, Garcia-Perez E, Vazquez-Vilar M, Rodriguez-Rodriguez M, Vazquez-Vilriales V, Shakhova ES, Mitiouchkina T, Belozerova OA, Kovalchuk SI, Alekberova A, Malyshevskaia AK, Bugaeva EN, Guglya EB, Balakireva A, Sytov N, Bezlikhotnova A, Boldyreva DI, Babenko VV, Kondrashov FA, Choob VV, Orzaez D, Yampolsky IV, Mishin AS, Sarkisyan KS. Palkina KA, et al. Among authors: boldyreva di. Sci Adv. 2024 Mar 8;10(10):eadk1992. doi: 10.1126/sciadv.adk1992. Epub 2024 Mar 8. Sci Adv. 2024. PMID: 38457503 Free PMC article.
An improved pathway for autonomous bioluminescence imaging in eukaryotes.
Shakhova ES, Karataeva TA, Markina NM, Mitiouchkina T, Palkina KA, Perfilov MM, Wood MG, Hoang TT, Hall MP, Fakhranurova LI, Alekberova AE, Malyshevskaia AK, Gorbachev DA, Bugaeva EN, Pletneva LK, Babenko VV, Boldyreva DI, Gorokhovatsky AY, Balakireva AV, Gao F, Choob VV, Encell LP, Wood KV, Yampolsky IV, Sarkisyan KS, Mishin AS. Shakhova ES, et al. Among authors: boldyreva di. Nat Methods. 2024 Mar;21(3):406-410. doi: 10.1038/s41592-023-02152-y. Epub 2024 Jan 22. Nat Methods. 2024. PMID: 38253843 Free PMC article.