Cirillo D - Search Results

1

The PENGUIN approach to reconstruct protein interactions at enhancer-promoter regions and its application to prostate cancer.

Armaos A, Serra F, Núñez-Carpintero I, Seo JH, Baca SC, Gustincich S, Valencia A, Freedman ML, Cirillo D, Giambartolomei C, Tartaglia GG. Armaos A, et al. Among authors: cirillo d. Nat Commun. 2023 Dec 6;14(1):8084. doi: 10.1038/s41467-023-43767-1. Nat Commun. 2023. PMID: 38057321 Free PMC article.

2

X-inactivation: quantitative predictions of protein interactions in the Xist network.

Agostini F, Cirillo D, Bolognesi B, Tartaglia GG. Agostini F, et al. Among authors: cirillo d. Nucleic Acids Res. 2013 Jan 7;41(1):e31. doi: 10.1093/nar/gks968. Epub 2012 Oct 22. Nucleic Acids Res. 2013. PMID: 23093590 Free PMC article.

3

Neurodegenerative diseases: quantitative predictions of protein-RNA interactions.

Cirillo D, Agostini F, Klus P, Marchese D, Rodriguez S, Bolognesi B, Tartaglia GG. Cirillo D, et al. RNA. 2013 Feb;19(2):129-40. doi: 10.1261/rna.034777.112. Epub 2012 Dec 21. RNA. 2013. PMID: 23264567 Free PMC article.

4

catRAPID omics: a web server for large-scale prediction of protein-RNA interactions.

Agostini F, Zanzoni A, Klus P, Marchese D, Cirillo D, Tartaglia GG. Agostini F, et al. Among authors: cirillo d. Bioinformatics. 2013 Nov 15;29(22):2928-30. doi: 10.1093/bioinformatics/btt495. Epub 2013 Aug 23. Bioinformatics. 2013. PMID: 23975767 Free PMC article.

5

Constitutive patterns of gene expression regulated by RNA-binding proteins.

Cirillo D, Marchese D, Agostini F, Livi CM, Botta-Orfila T, Tartaglia GG. Cirillo D, et al. Genome Biol. 2014 Jan 2;15(1):R13. doi: 10.1186/gb-2014-15-1-r13. Genome Biol. 2014. PMID: 24401680 Free PMC article.

6

Discovery of protein-RNA networks.

Cirillo D, Livi CM, Agostini F, Tartaglia GG. Cirillo D, et al. Mol Biosyst. 2014 Jul;10(7):1632-42. doi: 10.1039/c4mb00099d. Epub 2014 Apr 23. Mol Biosyst. 2014. PMID: 24756571 Review.

7

ccSOL omics: a webserver for solubility prediction of endogenous and heterologous expression in Escherichia coli.

Agostini F, Cirillo D, Livi CM, Delli Ponti R, Tartaglia GG. Agostini F, et al. Among authors: cirillo d. Bioinformatics. 2014 Oct 15;30(20):2975-7. doi: 10.1093/bioinformatics/btu420. Epub 2014 Jul 1. Bioinformatics. 2014. PMID: 24990610 Free PMC article.

8

SeAMotE: a method for high-throughput motif discovery in nucleic acid sequences.

Agostini F, Cirillo D, Ponti RD, Tartaglia GG. Agostini F, et al. Among authors: cirillo d. BMC Genomics. 2014 Oct 23;15(1):925. doi: 10.1186/1471-2164-15-925. BMC Genomics. 2014. PMID: 25341390 Free PMC article.

9

By the company they keep: interaction networks define the binding ability of transcription factors.

Cirillo D, Botta-Orfila T, Tartaglia GG. Cirillo D, et al. Nucleic Acids Res. 2015 Oct 30;43(19):e125. doi: 10.1093/nar/gkv607. Epub 2015 Jun 18. Nucleic Acids Res. 2015. PMID: 26089389 Free PMC article.

10

A Concentration-Dependent Liquid Phase Separation Can Cause Toxicity upon Increased Protein Expression.

Bolognesi B, Lorenzo Gotor N, Dhar R, Cirillo D, Baldrighi M, Tartaglia GG, Lehner B. Bolognesi B, et al. Among authors: cirillo d. Cell Rep. 2016 Jun 28;16(1):222-231. doi: 10.1016/j.celrep.2016.05.076. Epub 2016 Jun 16. Cell Rep. 2016. PMID: 27320918 Free PMC article.

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