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Page 1
Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics.
Matteson NL, Hassler GW, Kurzban E, Schwab MA, Perkins SA, Gangavarapu K, Levy JI, Parker E, Pride D, Hakim A, De Hoff P, Cheung W, Castro-Martinez A, Rivera A, Veder A, Rivera A, Wauer C, Holmes J, Wilson J, Ngo SN, Plascencia A, Lawrence ES, Smoot EW, Eisner ER, Tsai R, Chacón M, Baer NA, Seaver P, Salido RA, Aigner S, Ngo TT, Barber T, Ostrander T, Fielding-Miller R, Simmons EH, Zazueta OE, Serafin-Higuera I, Sanchez-Alavez M, Moreno-Camacho JL, García-Gil A, Murphy Schafer AR, McDonald E, Corrigan J, Malone JD, Stous S, Shah S, Moshiri N, Weiss A, Anderson C, Aceves CM, Spencer EG, Hufbauer EC, Lee JJ, King AJ, Ramesh KS, Nguyen KN, Saucedo K, Robles-Sikisaka R, Fisch KM, Gonias SL, Birmingham A, McDonald D, Karthikeyan S, Martin NK, Schooley RT, Negrete AJ, Reyna HJ, Chavez JR, Garcia ML, Cornejo-Bravo JM, Becker D, Isaksson M, Washington NL, Lee W, Garfein RS, Luna-Ruiz Esparza MA, Alcántar-Fernández J, Henson B, Jepsen K, Olivares-Flores B, Barrera-Badillo G, Lopez-Martínez I, Ramírez-González JE, Flores-León R, Kingsmore SF, Sanders A, Pradenas A, White B, Matthews G, Hale M, McLawhon RW, Reed SL, Winbush T, McHardy IH, Fielding RA, Nicholson L, Quigley MM, Harding … See abstract for full author list ➔ Matteson NL, et al. Among authors: hassler gw. Cell. 2023 Dec 21;186(26):5690-5704.e20. doi: 10.1016/j.cell.2023.11.024. Epub 2023 Dec 14. Cell. 2023. PMID: 38101407
Scalable Bayesian phylogenetics.
Fisher AA, Hassler GW, Ji X, Baele G, Suchard MA, Lemey P. Fisher AA, et al. Among authors: hassler gw. Philos Trans R Soc Lond B Biol Sci. 2022 Oct 10;377(1861):20210242. doi: 10.1098/rstb.2021.0242. Epub 2022 Aug 22. Philos Trans R Soc Lond B Biol Sci. 2022. PMID: 35989603 Free PMC article. Review.
Global disparities in SARS-CoV-2 genomic surveillance.
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C; Bulgarian SARS-CoV-2 sequencing group; Communicable Diseases Genomics Network (Australia and New Zealand); COVID-19 Impact Project; Danish Covid-19 Genome Consortium; Fiocruz COVID-19 Genomic Surveillance Network; GISAID core curation team; Network for Genomic Surveillance in South Africa (NGS-SA); Swiss SARS-CoV-2 Sequencing Consortium; Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Branda B, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. Brito AF, et al. Among authors: hassler gw. Nat Commun. 2022 Nov 16;13(1):7003. doi: 10.1038/s41467-022-33713-y. Nat Commun. 2022. PMID: 36385137 Free PMC article.
Modeling the velocity of evolving lineages and predicting dispersal patterns.
Bastide P, Rocu P, Wirtz J, Hassler GW, Chevenet F, Fargette D, Suchard MA, Dellicour S, Lemey P, Guindon S. Bastide P, et al. Among authors: hassler gw. Proc Natl Acad Sci U S A. 2024 Nov 19;121(47):e2411582121. doi: 10.1073/pnas.2411582121. Epub 2024 Nov 15. Proc Natl Acad Sci U S A. 2024. PMID: 39546571
Modeling the velocity of evolving lineages and predicting dispersal patterns.
Bastide P, Rocu P, Wirtz J, Hassler GW, Chevenet F, Fargette D, Suchard MA, Dellicour S, Lemey P, Guindon S. Bastide P, et al. Among authors: hassler gw. bioRxiv [Preprint]. 2024 Oct 28:2024.06.06.597755. doi: 10.1101/2024.06.06.597755. bioRxiv. 2024. Update in: Proc Natl Acad Sci U S A. 2024 Nov 19;121(47):e2411582121. doi: 10.1073/pnas.2411582121. PMID: 38895258 Free PMC article. Updated. Preprint.
Data integration in Bayesian phylogenetics.
Hassler GW, Magee A, Zhang Z, Baele G, Lemey P, Ji X, Fourment M, Suchard MA. Hassler GW, et al. Annu Rev Stat Appl. 2023;10:353-377. doi: 10.1146/annurev-statistics-033021-112532. Epub 2022 Sep 28. Annu Rev Stat Appl. 2023. PMID: 38774036 Free PMC article.
11 results