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Page 1
AtSNP_TATAdb: Candidate Molecular Markers of Plant Advantages Related to Single Nucleotide Polymorphisms within Proximal Promoters of Arabidopsis thaliana L.
Bogomolov A, Zolotareva K, Filonov S, Chadaeva I, Rasskazov D, Sharypova E, Podkolodnyy N, Ponomarenko P, Savinkova L, Tverdokhleb N, Khandaev B, Kondratyuk E, Podkolodnaya O, Zemlyanskaya E, Kolchanov NA, Ponomarenko M. Bogomolov A, et al. Among authors: podkolodnaya o. Int J Mol Sci. 2024 Jan 3;25(1):607. doi: 10.3390/ijms25010607. Int J Mol Sci. 2024. PMID: 38203780 Free PMC article.
Candidate SNP Markers of Chronopathologies Are Predicted by a Significant Change in the Affinity of TATA-Binding Protein for Human Gene Promoters.
Ponomarenko P, Rasskazov D, Suslov V, Sharypova E, Savinkova L, Podkolodnaya O, Podkolodny NL, Tverdokhleb NN, Chadaeva I, Ponomarenko M, Kolchanov N. Ponomarenko P, et al. Among authors: podkolodnaya o. Biomed Res Int. 2016;2016:8642703. doi: 10.1155/2016/8642703. Epub 2016 Aug 22. Biomed Res Int. 2016. PMID: 27635400 Free PMC article.
Plant_SNP_TATA_Z-Tester: A Web Service That Unequivocally Estimates the Impact of Proximal Promoter Mutations on Plant Gene Expression.
Rasskazov D, Chadaeva I, Sharypova E, Zolotareva K, Khandaev B, Ponomarenko P, Podkolodnyy N, Tverdokhleb N, Vishnevsky O, Bogomolov A, Podkolodnaya O, Savinkova L, Zemlyanskaya E, Golubyatnikov V, Kolchanov N, Ponomarenko M. Rasskazov D, et al. Among authors: podkolodnaya o. Int J Mol Sci. 2022 Aug 4;23(15):8684. doi: 10.3390/ijms23158684. Int J Mol Sci. 2022. PMID: 35955817 Free PMC article.
Candidate SNP Markers Significantly Altering the Affinity of TATA-Binding Protein for the Promoters of Human Hub Genes for Atherogenesis, Atherosclerosis and Atheroprotection.
Bogomolov A, Filonov S, Chadaeva I, Rasskazov D, Khandaev B, Zolotareva K, Kazachek A, Oshchepkov D, Ivanisenko VA, Demenkov P, Podkolodnyy N, Kondratyuk E, Ponomarenko P, Podkolodnaya O, Mustafin Z, Savinkova L, Kolchanov N, Tverdokhleb N, Ponomarenko M. Bogomolov A, et al. Among authors: podkolodnaya o. Int J Mol Sci. 2023 May 19;24(10):9010. doi: 10.3390/ijms24109010. Int J Mol Sci. 2023. PMID: 37240358 Free PMC article.
Unannotated single nucleotide polymorphisms in the TATA box of erythropoiesis genes show in vitro positive involvements in cognitive and mental disorders.
Ponomarenko M, Sharypova E, Drachkova I, Chadaeva I, Arkova O, Podkolodnaya O, Ponomarenko P, Kolchanov N, Savinkova L. Ponomarenko M, et al. Among authors: podkolodnaya o. BMC Med Genet. 2020 Oct 22;21(Suppl 1):165. doi: 10.1186/s12881-020-01106-x. BMC Med Genet. 2020. PMID: 33092544 Free PMC article.
Promoters of genes encoding β-amylase, albumin and globulin in food plants have weaker affinity for TATA-binding protein as compared to non-food plants: in silico analysis.
Vishnevsky OV, Chadaeva IV, Sharypova EB, Khandaev BM, Zolotareva KA, Kazachek AV, Ponomarenko PM, Podkolodny NL, Rasskazov DA, Bogomolov AG, Podkolodnaya OA, Savinkova LK, Zemlyanskaya EV, Ponomarenko MP. Vishnevsky OV, et al. Among authors: podkolodnaya oa. Vavilovskii Zhurnal Genet Selektsii. 2022 Dec;26(8):798-805. doi: 10.18699/VJGB-22-96. Vavilovskii Zhurnal Genet Selektsii. 2022. PMID: 36694715 Free PMC article.
Human_SNP_TATAdb: a database of SNPs that statistically significantly change the affinity of the TATA-binding protein to human gene promoters: genome-wide analysis and use cases.
Filonov SV, Podkolodnyy NL, Podkolodnaya OA, Tverdokhleb NN, Ponomarenko PM, Rasskazov DA, Bogomolov AG, Ponomarenko MP. Filonov SV, et al. Among authors: podkolodnaya oa. Vavilovskii Zhurnal Genet Selektsii. 2023 Dec;27(7):728-736. doi: 10.18699/VJGB-23-85. Vavilovskii Zhurnal Genet Selektsii. 2023. PMID: 38213714 Free PMC article.
Integrated databases and computer systems for studying eukaryotic gene expression.
Kolchanov NA, Ponomarenko MP, Frolov AS, Ananko EA, Kolpakov FA, Ignatieva EV, Podkolodnaya OA, Goryachkovskaya TN, Stepanenko IL, Merkulova TI, Babenko VV, Ponomarenko YV, Kochetov AV, Podkolodny NL, Vorobiev DV, Lavryushev SV, Grigorovich DA, Kondrakhin YV, Milanesi L, Wingender E, Solovyev V, Overton GC. Kolchanov NA, et al. Among authors: podkolodnaya oa. Bioinformatics. 1999 Jul-Aug;15(7-8):669-86. doi: 10.1093/bioinformatics/15.7.669. Bioinformatics. 1999. PMID: 10487874
24 results