Alm EJ - Search Results

1

Environmental stress mediates groundwater microbial community assembly.

Ning D, Wang Y, Fan Y, Wang J, Van Nostrand JD, Wu L, Zhang P, Curtis DJ, Tian R, Lui L, Hazen TC, Alm EJ, Fields MW, Poole F, Adams MWW, Chakraborty R, Stahl DA, Adams PD, Arkin AP, He Z, Zhou J. Ning D, et al. Among authors: alm ej. Nat Microbiol. 2024 Feb;9(2):490-501. doi: 10.1038/s41564-023-01573-x. Epub 2024 Jan 11. Nat Microbiol. 2024. PMID: 38212658

2

Biological networks.

Alm E, Arkin AP. Alm E, et al. Curr Opin Struct Biol. 2003 Apr;13(2):193-202. doi: 10.1016/s0959-440x(03)00031-9. Curr Opin Struct Biol. 2003. PMID: 12727512 Review.

3

Global transcriptome analysis of the heat shock response of Shewanella oneidensis.

Gao H, Wang Y, Liu X, Yan T, Wu L, Alm E, Arkin A, Thompson DK, Zhou J. Gao H, et al. J Bacteriol. 2004 Nov;186(22):7796-803. doi: 10.1128/JB.186.22.7796-7803.2004. J Bacteriol. 2004. PMID: 15516594 Free PMC article.

4

A novel method for accurate operon predictions in all sequenced prokaryotes.

Price MN, Huang KH, Alm EJ, Arkin AP. Price MN, et al. Among authors: alm ej. Nucleic Acids Res. 2005 Feb 8;33(3):880-92. doi: 10.1093/nar/gki232. Print 2005. Nucleic Acids Res. 2005. PMID: 15701760 Free PMC article.

5

Transcriptome analysis of Shewanella oneidensis MR-1 in response to elevated salt conditions.

Liu Y, Gao W, Wang Y, Wu L, Liu X, Yan T, Alm E, Arkin A, Thompson DK, Fields MW, Zhou J. Liu Y, et al. J Bacteriol. 2005 Apr;187(7):2501-7. doi: 10.1128/JB.187.7.2501-2507.2005. J Bacteriol. 2005. PMID: 15774893 Free PMC article.

6

Operon formation is driven by co-regulation and not by horizontal gene transfer.

Price MN, Huang KH, Arkin AP, Alm EJ. Price MN, et al. Among authors: alm ej. Genome Res. 2005 Jun;15(6):809-19. doi: 10.1101/gr.3368805. Genome Res. 2005. PMID: 15930492 Free PMC article.

7

Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication.

Price MN, Alm EJ, Arkin AP. Price MN, et al. Among authors: alm ej. Nucleic Acids Res. 2005 Jun 7;33(10):3224-34. doi: 10.1093/nar/gki638. Print 2005. Nucleic Acids Res. 2005. PMID: 15942025 Free PMC article.

8

The MicrobesOnline Web site for comparative genomics.

Alm EJ, Huang KH, Price MN, Koche RP, Keller K, Dubchak IL, Arkin AP. Alm EJ, et al. Genome Res. 2005 Jul;15(7):1015-22. doi: 10.1101/gr.3844805. Genome Res. 2005. PMID: 15998914 Free PMC article.

9

Cellular response of Shewanella oneidensis to strontium stress.

Brown SD, Martin M, Deshpande S, Seal S, Huang K, Alm E, Yang Y, Wu L, Yan T, Liu X, Arkin A, Chourey K, Zhou J, Thompson DK. Brown SD, et al. Appl Environ Microbiol. 2006 Jan;72(1):890-900. doi: 10.1128/AEM.72.1.890-900.2006. Appl Environ Microbiol. 2006. PMID: 16391131 Free PMC article.

10

OpWise: operons aid the identification of differentially expressed genes in bacterial microarray experiments.

Price MN, Arkin AP, Alm EJ. Price MN, et al. Among authors: alm ej. BMC Bioinformatics. 2006 Jan 13;7:19. doi: 10.1186/1471-2105-7-19. BMC Bioinformatics. 2006. PMID: 16412220 Free PMC article.

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