Murakami KS - Search Results

1

Structure and function of the Si3 insertion integrated into the trigger loop/helix of cyanobacterial RNA polymerase.

Qayyum MZ, Imashimizu M, Leanca M, Vishwakarma RK, Riaz-Bradley A, Yuzenkova Y, Murakami KS. Qayyum MZ, et al. Among authors: murakami ks. Proc Natl Acad Sci U S A. 2024 Feb 20;121(8):e2311480121. doi: 10.1073/pnas.2311480121. Epub 2024 Feb 14. Proc Natl Acad Sci U S A. 2024. PMID: 38354263 Free PMC article.

2

Structural basis of RNA polymerase recycling by the Swi2/Snf2 family of ATPase RapA in Escherichia coli.

Qayyum MZ, Molodtsov V, Renda A, Murakami KS. Qayyum MZ, et al. Among authors: murakami ks. J Biol Chem. 2021 Dec;297(6):101404. doi: 10.1016/j.jbc.2021.101404. Epub 2021 Nov 12. J Biol Chem. 2021. PMID: 34774797 Free PMC article.

3

On the stability of stalled RNA polymerase and its removal by RapA.

Portman JR, Qayyum MZ, Murakami KS, Strick TR. Portman JR, et al. Among authors: murakami ks. Nucleic Acids Res. 2022 Jul 22;50(13):7396-7405. doi: 10.1093/nar/gkac558. Nucleic Acids Res. 2022. PMID: 35819188 Free PMC article.

4

The structure and activities of the archaeal transcription termination factor Eta detail vulnerabilities of the transcription elongation complex.

Marshall CJ, Qayyum MZ, Walker JE, Murakami KS, Santangelo TJ. Marshall CJ, et al. Among authors: murakami ks. Proc Natl Acad Sci U S A. 2022 Aug 9;119(32):e2207581119. doi: 10.1073/pnas.2207581119. Epub 2022 Aug 2. Proc Natl Acad Sci U S A. 2022. PMID: 35917344 Free PMC article.

5

Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.

Vishwakarma RK, Qayyum MZ, Babitzke P, Murakami KS. Vishwakarma RK, et al. Among authors: murakami ks. Proc Natl Acad Sci U S A. 2023 Feb 14;120(7):e2218516120. doi: 10.1073/pnas.2218516120. Epub 2023 Feb 6. Proc Natl Acad Sci U S A. 2023. PMID: 36745813 Free PMC article.

6

Cryo-EM structure of Escherichia coli σ⁷⁰ RNA polymerase and promoter DNA complex revealed a role of σ non-conserved region during the open complex formation.

Narayanan A, Vago FS, Li K, Qayyum MZ, Yernool D, Jiang W, Murakami KS. Narayanan A, et al. Among authors: murakami ks. J Biol Chem. 2018 May 11;293(19):7367-7375. doi: 10.1074/jbc.RA118.002161. Epub 2018 Mar 26. J Biol Chem. 2018. PMID: 29581236 Free PMC article.

7

Structural basis of ribosomal RNA transcription regulation.

Shin Y, Qayyum MZ, Pupov D, Esyunina D, Kulbachinskiy A, Murakami KS. Shin Y, et al. Among authors: murakami ks. Nat Commun. 2021 Jan 22;12(1):528. doi: 10.1038/s41467-020-20776-y. Nat Commun. 2021. PMID: 33483500 Free PMC article.

8

RNA polymerase and transcription elongation factor Spt4/5 complex structure.

Klein BJ, Bose D, Baker KJ, Yusoff ZM, Zhang X, Murakami KS. Klein BJ, et al. Among authors: murakami ks. Proc Natl Acad Sci U S A. 2011 Jan 11;108(2):546-50. doi: 10.1073/pnas.1013828108. Epub 2010 Dec 27. Proc Natl Acad Sci U S A. 2011. PMID: 21187417 Free PMC article.

9

Comprehensive transcription terminator atlas for Bacillus subtilis.

Mandell ZF, Vishwakarma RK, Yakhnin H, Murakami KS, Kashlev M, Babitzke P. Mandell ZF, et al. Among authors: murakami ks. Nat Microbiol. 2022 Nov;7(11):1918-1931. doi: 10.1038/s41564-022-01240-7. Epub 2022 Oct 3. Nat Microbiol. 2022. PMID: 36192538 Free PMC article.

10

X-ray crystal structure of the polymerase domain of the bacteriophage N4 virion RNA polymerase.

Murakami KS, Davydova EK, Rothman-Denes LB. Murakami KS, et al. Proc Natl Acad Sci U S A. 2008 Apr 1;105(13):5046-51. doi: 10.1073/pnas.0712325105. Epub 2008 Mar 24. Proc Natl Acad Sci U S A. 2008. PMID: 18362338 Free PMC article.

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