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Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.
Paredes MI, Perofsky AC, Frisbie L, Moncla LH, Roychoudhury P, Xie H, Bakhash SAM, Kong K, Arnould I, Nguyen TV, Wendm ST, Hajian P, Ellis S, Mathias PC, Greninger AL, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, Stone J, McDermot E, Truong M, Shendure J, Oltean HN, Viboud C, Chu H, Müller NF, Bedford T. Paredes MI, et al. Among authors: viboud c. PLoS Pathog. 2024 Mar 26;20(3):e1012117. doi: 10.1371/journal.ppat.1012117. eCollection 2024 Mar. PLoS Pathog. 2024. PMID: 38530853 Free PMC article.
Trends in Risk Factors and Symptoms Associated With SARS-CoV-2 and Rhinovirus Test Positivity in King County, Washington, June 2020 to July 2022.
Hansen C, Perofsky AC, Burstein R, Famulare M, Boyle S, Prentice R, Marshall C, McCormick BJJ, Reinhart D, Capodanno B, Truong M, Schwabe-Fry K, Kuchta K, Pfau B, Acker Z, Lee J, Sibley TR, McDermot E, Rodriguez-Salas L, Stone J, Gamboa L, Han PD, Duchin JS, Waghmare A, Englund JA, Shendure J, Bedford T, Chu HY, Starita LM, Viboud C. Hansen C, et al. Among authors: viboud c. JAMA Netw Open. 2022 Dec 1;5(12):e2245861. doi: 10.1001/jamanetworkopen.2022.45861. JAMA Netw Open. 2022. PMID: 36484987 Free PMC article.
Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave in Europe and the United States.
Davis JT, Chinazzi M, Perra N, Mu K, Piontti APY, Ajelli M, Dean NE, Gioannini C, Litvinova M, Merler S, Rossi L, Sun K, Xiong X, Halloran ME, Longini IM Jr, Viboud C, Vespignani A. Davis JT, et al. Among authors: viboud c. medRxiv [Preprint]. 2021 Mar 26:2021.03.24.21254199. doi: 10.1101/2021.03.24.21254199. medRxiv. 2021. Update in: Nature. 2021 Dec;600(7887):127-132. doi: 10.1038/s41586-021-04130-w PMID: 33791745 Free PMC article. Updated. Preprint.
Host heterogeneity and epistasis explain punctuated evolution of SARS-CoV-2.
Nielsen BF, Saad-Roy CM, Li Y, Sneppen K, Simonsen L, Viboud C, Levin SA, Grenfell BT. Nielsen BF, et al. Among authors: viboud c. PLoS Comput Biol. 2023 Feb 15;19(2):e1010896. doi: 10.1371/journal.pcbi.1010896. eCollection 2023 Feb. PLoS Comput Biol. 2023. PMID: 36791146 Free PMC article.
Impact of SARS-CoV-2 vaccination of children ages 5-11 years on COVID-19 disease burden and resilience to new variants in the United States, November 2021-March 2022: A multi-model study.
Borchering RK, Mullany LC, Howerton E, Chinazzi M, Smith CP, Qin M, Reich NG, Contamin L, Levander J, Kerr J, Espino J, Hochheiser H, Lovett K, Kinsey M, Tallaksen K, Wilson S, Shin L, Lemaitre JC, Hulse JD, Kaminsky J, Lee EC, Hill AL, Davis JT, Mu K, Xiong X, Pastore Y Piontti A, Vespignani A, Srivastava A, Porebski P, Venkatramanan S, Adiga A, Lewis B, Klahn B, Outten J, Hurt B, Chen J, Mortveit H, Wilson A, Marathe M, Hoops S, Bhattacharya P, Machi D, Chen S, Paul R, Janies D, Thill JC, Galanti M, Yamana T, Pei S, Shaman J, España G, Cavany S, Moore S, Perkins A, Healy JM, Slayton RB, Johansson MA, Biggerstaff M, Shea K, Truelove SA, Runge MC, Viboud C, Lessler J. Borchering RK, et al. Among authors: viboud c. Lancet Reg Health Am. 2023 Jan;17:100398. doi: 10.1016/j.lana.2022.100398. Epub 2022 Nov 22. Lancet Reg Health Am. 2023. PMID: 36437905 Free PMC article.
Herd immunity induced by COVID-19 vaccination programs and suppression of epidemics caused by the SARS-CoV-2 Delta variant in China.
Liu H, Zhang J, Cai J, Deng X, Peng C, Chen X, Yang J, Wu Q, Chen X, Chen Z, Zheng W, Viboud C, Zhang W, Ajelli M, Yu H. Liu H, et al. Among authors: viboud c. medRxiv [Preprint]. 2021 Sep 14:2021.07.23.21261013. doi: 10.1101/2021.07.23.21261013. medRxiv. 2021. Update in: BMC Med. 2022 Jan 31;20(1):37. doi: 10.1186/s12916-022-02243-1 PMID: 34341803 Free PMC article. Updated. Preprint.
Inferring the differences in incubation-period and generation-interval distributions of the Delta and Omicron variants of SARS-CoV-2.
Park SW, Sun K, Abbott S, Sender R, Bar-On YM, Weitz JS, Funk S, Grenfell BT, Backer JA, Wallinga J, Viboud C, Dushoff J. Park SW, et al. Among authors: viboud c. Proc Natl Acad Sci U S A. 2023 May 30;120(22):e2221887120. doi: 10.1073/pnas.2221887120. Epub 2023 May 22. Proc Natl Acad Sci U S A. 2023. PMID: 37216529 Free PMC article.
370 results