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Page 1
Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines.
Kovalchik KA, Hamelin DJ, Kubiniok P, Bourdin B, Mostefai F, Poujol R, Paré B, Simpson SM, Sidney J, Bonneil É, Courcelles M, Saini SK, Shahbazy M, Kapoor S, Rajesh V, Weitzen M, Grenier JC, Gharsallaoui B, Maréchal L, Wu Z, Savoie C, Sette A, Thibault P, Sirois I, Smith MA, Decaluwe H, Hussin JG, Lavallée-Adam M, Caron E. Kovalchik KA, et al. Among authors: mostefai f. Nat Commun. 2024 Nov 28;15(1):10316. doi: 10.1038/s41467-024-54734-9. Nat Commun. 2024. PMID: 39609459 Free PMC article.
Intra-Host Evolution Analyses in an Immunosuppressed Patient Supports SARS-CoV-2 Viral Reservoir Hypothesis.
Fournelle D, Mostefai F, Brunet-Ratnasingham E, Poujol R, Grenier JC, Gálvez JH, Pagliuzza A, Levade I, Moreira S, Benlarbi M, Beaudoin-Bussières G, Gendron-Lepage G, Bourassa C, Tauzin A, Grandjean Lapierre S, Chomont N, Finzi A, Kaufmann DE, Craig M, Hussin JG. Fournelle D, et al. Among authors: mostefai f. Viruses. 2024 Feb 23;16(3):342. doi: 10.3390/v16030342. Viruses. 2024. PMID: 38543708 Free PMC article.
Selection for immune evasion in SARS-CoV-2 revealed by high-resolution epitope mapping and sequence analysis.
N'Guessan A, Kailasam S, Mostefai F, Poujol R, Grenier JC, Ismailova N, Contini P, De Palma R, Haber C, Stadler V, Bourque G, Hussin JG, Shapiro BJ, Fritz JH, Piccirillo CA. N'Guessan A, et al. Among authors: mostefai f. iScience. 2023 Jul 13;26(8):107394. doi: 10.1016/j.isci.2023.107394. eCollection 2023 Aug 18. iScience. 2023. PMID: 37599818 Free PMC article.
Population Genomics Approaches for Genetic Characterization of SARS-CoV-2 Lineages.
Mostefai F, Gamache I, N'Guessan A, Pelletier J, Huang J, Murall CL, Pesaranghader A, Gaonac'h-Lovejoy V, Hamelin DJ, Poujol R, Grenier JC, Smith M, Caron E, Craig M, Wolf G, Krishnaswamy S, Shapiro BJ, Hussin JG. Mostefai F, et al. Front Med (Lausanne). 2022 Feb 21;9:826746. doi: 10.3389/fmed.2022.826746. eCollection 2022. Front Med (Lausanne). 2022. PMID: 35265640 Free PMC article.
Patient health records and whole viral genomes from an early SARS-CoV-2 outbreak in a Quebec hospital reveal features associated with favorable outcomes.
Paré B, Rozendaal M, Morin S, Kaufmann L, Simpson SM, Poujol R, Mostefai F, Grenier JC, Xing H, Sanchez M, Yechouron A, Racette R, Hussin JG, Wolf G, Pavlov I, Smith MA. Paré B, et al. Among authors: mostefai f. PLoS One. 2021 Dec 2;16(12):e0260714. doi: 10.1371/journal.pone.0260714. eCollection 2021. PLoS One. 2021. PMID: 34855869 Free PMC article.
The mutational landscape of SARS-CoV-2 variants diversifies T cell targets in an HLA-supertype-dependent manner.
Hamelin DJ, Fournelle D, Grenier JC, Schockaert J, Kovalchik KA, Kubiniok P, Mostefai F, Duquette JD, Saab F, Sirois I, Smith MA, Pattijn S, Soudeyns H, Decaluwe H, Hussin J, Caron E. Hamelin DJ, et al. Among authors: mostefai f. Cell Syst. 2022 Feb 16;13(2):143-157.e3. doi: 10.1016/j.cels.2021.09.013. Epub 2021 Oct 6. Cell Syst. 2022. PMID: 34637888 Free PMC article.
Genomic epidemiology and associated clinical outcomes of a SARS-CoV-2 outbreak in a general adult hospital in Quebec.
Paré B, Rozendaal M, Morin S, Poujol R, Mostefai F, Grenier JC, Kaufmann L, Xing H, Sanchez M, Yechouron A, Racette R, Hussin J, Wolf G, Pavlov I, Smith MA. Paré B, et al. Among authors: mostefai f. medRxiv [Preprint]. 2021 Jun 1:2021.05.29.21257760. doi: 10.1101/2021.05.29.21257760. medRxiv. 2021. Update in: PLoS One. 2021 Dec 2;16(12):e0260714. doi: 10.1371/journal.pone.0260714 PMID: 34100030 Free PMC article. Updated. Preprint.