Mesiti M - Search Results

1

An open source knowledge graph ecosystem for the life sciences.

Callahan TJ, Tripodi IJ, Stefanski AL, Cappelletti L, Taneja SB, Wyrwa JM, Casiraghi E, Matentzoglu NA, Reese J, Silverstein JC, Hoyt CT, Boyce RD, Malec SA, Unni DR, Joachimiak MP, Robinson PN, Mungall CJ, Cavalleri E, Fontana T, Valentini G, Mesiti M, Gillenwater LA, Santangelo B, Vasilevsky NA, Hoehndorf R, Bennett TD, Ryan PB, Hripcsak G, Kahn MG, Bada M, Baumgartner WA Jr, Hunter LE. Callahan TJ, et al. Among authors: mesiti m. Sci Data. 2024 Apr 11;11(1):363. doi: 10.1038/s41597-024-03171-w. Sci Data. 2024. PMID: 38605048 Free PMC article.

2

XML-based approaches for the integration of heterogeneous bio-molecular data.

Mesiti M, Jiménez-Ruiz E, Sanz I, Berlanga-Llavori R, Perlasca P, Valentini G, Manset D. Mesiti M, et al. BMC Bioinformatics. 2009 Oct 15;10 Suppl 12(Suppl 12):S7. doi: 10.1186/1471-2105-10-S12-S7. BMC Bioinformatics. 2009. PMID: 19828083 Free PMC article.

3

A fast ranking algorithm for predicting gene functions in biomolecular networks.

Re M, Mesiti M, Valentini G. Re M, et al. Among authors: mesiti m. IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1812-8. doi: 10.1109/TCBB.2012.114. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 23221088 Free article.

4

Think globally and solve locally: secondary memory-based network learning for automated multi-species function prediction.

Mesiti M, Re M, Valentini G. Mesiti M, et al. Gigascience. 2014 Apr 23;3:5. doi: 10.1186/2047-217X-3-5. eCollection 2014. Gigascience. 2014. PMID: 24843788 Free PMC article.

5

RANKS: a flexible tool for node label ranking and classification in biological networks.

Valentini G, Armano G, Frasca M, Lin J, Mesiti M, Re M. Valentini G, et al. Among authors: mesiti m. Bioinformatics. 2016 Sep 15;32(18):2872-4. doi: 10.1093/bioinformatics/btw235. Epub 2016 Jun 2. Bioinformatics. 2016. PMID: 27256314 Free article.

6

A GPU-based algorithm for fast node label learning in large and unbalanced biomolecular networks.

Frasca M, Grossi G, Gliozzo J, Mesiti M, Notaro M, Perlasca P, Petrini A, Valentini G. Frasca M, et al. Among authors: mesiti m. BMC Bioinformatics. 2018 Oct 15;19(Suppl 10):353. doi: 10.1186/s12859-018-2301-4. BMC Bioinformatics. 2018. PMID: 30367594 Free PMC article.

7

UNIPred-Web: a web tool for the integration and visualization of biomolecular networks for protein function prediction.

Perlasca P, Frasca M, Ba CT, Notaro M, Petrini A, Casiraghi E, Grossi G, Gliozzo J, Valentini G, Mesiti M. Perlasca P, et al. Among authors: mesiti m. BMC Bioinformatics. 2019 Aug 14;20(1):422. doi: 10.1186/s12859-019-2959-2. BMC Bioinformatics. 2019. PMID: 31412768 Free PMC article.

8

Network modeling of patients' biomolecular profiles for clinical phenotype/outcome prediction.

Gliozzo J, Perlasca P, Mesiti M, Casiraghi E, Vallacchi V, Vergani E, Frasca M, Grossi G, Petrini A, Re M, Paccanaro A, Valentini G. Gliozzo J, et al. Among authors: mesiti m. Sci Rep. 2020 Feb 27;10(1):3612. doi: 10.1038/s41598-020-60235-8. Sci Rep. 2020. PMID: 32107391 Free PMC article.

9

parSMURF, a high-performance computing tool for the genome-wide detection of pathogenic variants.

Petrini A, Mesiti M, Schubach M, Frasca M, Danis D, Re M, Grossi G, Cappelletti L, Castrignanò T, Robinson PN, Valentini G. Petrini A, et al. Among authors: mesiti m. Gigascience. 2020 May 1;9(5):giaa052. doi: 10.1093/gigascience/giaa052. Gigascience. 2020. PMID: 32444882 Free PMC article.

10

Multi-resolution visualization and analysis of biomolecular networks through hierarchical community detection and web-based graphical tools.

Perlasca P, Frasca M, Ba CT, Gliozzo J, Notaro M, Pennacchioni M, Valentini G, Mesiti M. Perlasca P, et al. Among authors: mesiti m. PLoS One. 2020 Dec 22;15(12):e0244241. doi: 10.1371/journal.pone.0244241. eCollection 2020. PLoS One. 2020. PMID: 33351828 Free PMC article.

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