Soni V - Search Results

1

Population genetic considerations regarding the interpretation of within-patient SARS-CoV-2 polymorphism data.

Soni V, Terbot JW 2nd, Jensen JD. Soni V, et al. Nat Commun. 2024 Apr 16;15(1):3240. doi: 10.1038/s41467-024-46261-4. Nat Commun. 2024. PMID: 38627371 Free PMC article. No abstract available.

2

Developing an appropriate evolutionary baseline model for the study of SARS-CoV-2 patient samples.

Terbot JW 2nd, Johri P, Liphardt SW, Soni V, Pfeifer SP, Cooper BS, Good JM, Jensen JD. Terbot JW 2nd, et al. Among authors: soni v. PLoS Pathog. 2023 Apr 5;19(4):e1011265. doi: 10.1371/journal.ppat.1011265. eCollection 2023 Apr. PLoS Pathog. 2023. PMID: 37018331 Free PMC article. Review.

3

Developing an Appropriate Evolutionary Baseline Model for the Study of Human Cytomegalovirus.

Howell AA, Terbot JW, Soni V, Johri P, Jensen JD, Pfeifer SP. Howell AA, et al. Among authors: soni v. Genome Biol Evol. 2023 Apr 6;15(4):evad059. doi: 10.1093/gbe/evad059. Genome Biol Evol. 2023. PMID: 37071785 Free PMC article.

4

Evaluating power to detect recurrent selective sweeps under increasingly realistic evolutionary null models.

Soni V, Johri P, Jensen JD. Soni V, et al. Evolution. 2023 Oct 3;77(10):2113-2127. doi: 10.1093/evolut/qpad120. Evolution. 2023. PMID: 37395482 Free PMC article.

5

The effects of mutation and recombination rate heterogeneity on the inference of demography and the distribution of fitness effects.

Soni V, Pfeifer SP, Jensen JD. Soni V, et al. bioRxiv [Preprint]. 2023 Nov 13:2023.11.11.566703. doi: 10.1101/2023.11.11.566703. bioRxiv. 2023. Update in: Genome Biol Evol. 2024 Feb 1;16(2):evae004. doi: 10.1093/gbe/evae004 PMID: 38014252 Free PMC article. Updated. Preprint.

6

The Effects of Mutation and Recombination Rate Heterogeneity on the Inference of Demography and the Distribution of Fitness Effects.

Soni V, Pfeifer SP, Jensen JD. Soni V, et al. Genome Biol Evol. 2024 Feb 1;16(2):evae004. doi: 10.1093/gbe/evae004. Genome Biol Evol. 2024. PMID: 38207127 Free PMC article.

7

Temporal challenges in detecting balancing selection from population genomic data.

Soni V, Jensen JD. Soni V, et al. G3 (Bethesda). 2024 Jun 5;14(6):jkae069. doi: 10.1093/g3journal/jkae069. G3 (Bethesda). 2024. PMID: 38551137 Free PMC article.

8

Evaluating power to detect recurrent selective sweeps under increasingly realistic evolutionary null models.

Soni V, Johri P, Jensen JD. Soni V, et al. bioRxiv [Preprint]. 2023 Jun 15:2023.06.15.545166. doi: 10.1101/2023.06.15.545166. bioRxiv. 2023. Update in: Evolution. 2023 Oct 3;77(10):2113-2127. doi: 10.1093/evolut/qpad120 PMID: 37398347 Free PMC article. Updated. Preprint.

9

Changing Population Size in McDonald-Kreitman Style Analyses: Artifactual Correlations and Adaptive Evolution between Humans and Chimpanzees.

Soni V, Moutinho AF, Eyre-Walker A. Soni V, et al. Genome Biol Evol. 2022 Feb 4;14(2):evac022. doi: 10.1093/gbe/evac022. Genome Biol Evol. 2022. PMID: 35143656 Free PMC article.

10

A new test suggests hundreds of amino acid polymorphisms in humans are subject to balancing selection.

Soni V, Vos M, Eyre-Walker A. Soni V, et al. PLoS Biol. 2022 Jun 2;20(6):e3001645. doi: 10.1371/journal.pbio.3001645. eCollection 2022 Jun. PLoS Biol. 2022. PMID: 35653351 Free PMC article.

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