Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Additional filters

Article Language

Species

Sex

Age

Other

Search Results

43 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Publication Date timeline is not available.
Page 1
DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus.
Vogels CBF, Hill V, Breban MI, Chaguza C, Paul LM, Sodeinde A, Taylor-Salmon E, Ott IM, Petrone ME, Dijk D, Jonges M, Welkers MRA, Locksmith T, Dong Y, Tarigopula N, Tekin O, Schmedes S, Bunch S, Cano N, Jaber R, Panzera C, Stryker I, Vergara J, Zimler R, Kopp E, Heberlein L, Herzog KS, Fauver JR, Morrison AM, Michael SF, Grubaugh ND. Vogels CBF, et al. Among authors: breban mi. BMC Genomics. 2024 May 1;25(1):433. doi: 10.1186/s12864-024-10350-x. BMC Genomics. 2024. PMID: 38693476 Free PMC article.
Early introductions and community transmission of SARS-CoV-2 variant B.1.1.7 in the United States.
Alpert T, Brito AF, Lasek-Nesselquist E, Rothman J, Valesano AL, MacKay MJ, Petrone ME, Breban MI, Watkins AE, Vogels CBF, Kalinich CC, Dellicour S, Russell A, Kelly JP, Shudt M, Plitnick J, Schneider E, Fitzsimmons WJ, Khullar G, Metti J, Dudley JT, Nash M, Beaubier N, Wang J, Liu C, Hui P, Muyombwe A, Downing R, Razeq J, Bart SM, Grills A, Morrison SM, Murphy S, Neal C, Laszlo E, Rennert H, Cushing M, Westblade L, Velu P, Craney A, Fauntleroy KA, Peaper DR, Landry ML, Cook PW, Fauver JR, Mason CE, Lauring AS, George KS, MacCannell DR, Grubaugh ND. Alpert T, et al. Among authors: breban mi. medRxiv [Preprint]. 2021 Mar 11:2021.02.10.21251540. doi: 10.1101/2021.02.10.21251540. medRxiv. 2021. Update in: Cell. 2021 May 13;184(10):2595-2604.e13. doi: 10.1016/j.cell.2021.03.061 PMID: 33594373 Free PMC article. Updated. Preprint.
PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern.
Vogels CBF, Breban MI, Alpert T, Petrone ME, Watkins AE, Ott IM, de Jesus JG, Claro IM, Ferreira GM, Crispim MAE; Brazil-UK CADDE Genomic Network; Singh L, Tegally H, Anyaneji UJ; NGS-SA; Hodcroft EB, Mason CE, Khullar G, Metti J, Dudley JT, MacKay MJ, Nash M, Wang J, Liu C, Hui P, Murphy S, Neal C, Laszlo E, Landry ML, Muyombwe A, Downing R, Razeq J, de Oliveira T, Faria NR, Sabino EC, Neher RA, Fauver JR, Grubaugh ND. Vogels CBF, et al. Among authors: breban mi. medRxiv [Preprint]. 2021 Mar 12:2021.01.28.21250486. doi: 10.1101/2021.01.28.21250486. medRxiv. 2021. Update in: PLoS Biol. 2021 May 7;19(5):e3001236. doi: 10.1371/journal.pbio.3001236 PMID: 33758901 Free PMC article. Updated. Preprint.
Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States.
Alpert T, Brito AF, Lasek-Nesselquist E, Rothman J, Valesano AL, MacKay MJ, Petrone ME, Breban MI, Watkins AE, Vogels CBF, Kalinich CC, Dellicour S, Russell A, Kelly JP, Shudt M, Plitnick J, Schneider E, Fitzsimmons WJ, Khullar G, Metti J, Dudley JT, Nash M, Beaubier N, Wang J, Liu C, Hui P, Muyombwe A, Downing R, Razeq J, Bart SM, Grills A, Morrison SM, Murphy S, Neal C, Laszlo E, Rennert H, Cushing M, Westblade L, Velu P, Craney A, Cong L, Peaper DR, Landry ML, Cook PW, Fauver JR, Mason CE, Lauring AS, St George K, MacCannell DR, Grubaugh ND. Alpert T, et al. Among authors: breban mi. Cell. 2021 May 13;184(10):2595-2604.e13. doi: 10.1016/j.cell.2021.03.061. Epub 2021 Apr 3. Cell. 2021. PMID: 33891875 Free PMC article.
Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2.
Vogels CBF, Breban MI, Ott IM, Alpert T, Petrone ME, Watkins AE, Kalinich CC, Earnest R, Rothman JE, Goes de Jesus J, Morales Claro I, Magalhães Ferreira G, Crispim MAE; Brazil-UK CADDE Genomic Network; Singh L, Tegally H, Anyaneji UJ; Network for Genomic Surveillance in South Africa; Hodcroft EB, Mason CE, Khullar G, Metti J, Dudley JT, MacKay MJ, Nash M, Wang J, Liu C, Hui P, Murphy S, Neal C, Laszlo E, Landry ML, Muyombwe A, Downing R, Razeq J, de Oliveira T, Faria NR, Sabino EC, Neher RA, Fauver JR, Grubaugh ND. Vogels CBF, et al. Among authors: breban mi. PLoS Biol. 2021 May 7;19(5):e3001236. doi: 10.1371/journal.pbio.3001236. eCollection 2021 May. PLoS Biol. 2021. PMID: 33961632 Free PMC article.
A stem-loop RNA RIG-I agonist confers prophylactic and therapeutic protection against acute and chronic SARS-CoV-2 infection in mice.
Mao T, Israelow B, Lucas C, Vogels CBF, Fedorova O, Breban MI, Menasche BL, Dong H, Linehan M; Yale SARS-CoV-2 Genome Surveillance Initiative; Wilen CB, Landry ML, Grubaugh ND, Pyle AM, Iwasaki A. Mao T, et al. Among authors: breban mi. bioRxiv [Preprint]. 2021 Jun 17:2021.06.16.448754. doi: 10.1101/2021.06.16.448754. bioRxiv. 2021. Update in: J Exp Med. 2022 Jan 3;219(1):e20211818. doi: 10.1084/jem.20211818 PMID: 34159330 Free PMC article. Updated. Preprint.
Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 lineages.
Petrone ME, Rothman JE, Breban MI, Ott IM, Russell A, Lasek-Nesselquist E, Kelly K, Omerza G, Renzette N, Watkins AE, Kalinich CC, Alpert T, Brito AF, Earnest R, Tikhonova IR, Castaldi C, Kelly JP, Shudt M, Plitnick J, Schneider E, Murphy S, Neal C, Laszlo E, Altajar A, Pearson C, Muyombwe A, Downing R, Razeq J, Niccolai L, Wilson MS, Anderson ML, Wang J, Liu C, Hui P, Mane S, Taylor BP, Hanage WP, Landry ML, Peaper DR, Bilguvar K, Fauver JR, Vogels CBF, Gardner LM, Pitzer VE, St George K, Adams MD, Grubaugh ND. Petrone ME, et al. Among authors: breban mi. medRxiv [Preprint]. 2021 Jul 2:2021.07.01.21259859. doi: 10.1101/2021.07.01.21259859. medRxiv. 2021. Update in: Commun Biol. 2022 May 11;5(1):439. doi: 10.1038/s42003-022-03347-3 PMID: 34230938 Free PMC article. Updated. Preprint.
Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification.
Baaijens JA, Zulli A, Ott IM, Petrone ME, Alpert T, Fauver JR, Kalinich CC, Vogels CBF, Breban MI, Duvallet C, McElroy K, Ghaeli N, Imakaev M, Mckenzie-Bennett M, Robison K, Plocik A, Schilling R, Pierson M, Littlefield R, Spencer M, Simen BB; Yale SARS-CoV-2 Genomic Surveillance Initiative; Hanage WP, Grubaugh ND, Peccia J, Baym M. Baaijens JA, et al. Among authors: breban mi. medRxiv [Preprint]. 2021 Sep 2:2021.08.31.21262938. doi: 10.1101/2021.08.31.21262938. medRxiv. 2021. Update in: Genome Biol. 2022 Nov 8;23(1):236. doi: 10.1186/s13059-022-02805-9 PMID: 34494031 Free PMC article. Updated. Preprint.
43 results