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Page 1
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training.
Griffiths EJ, Mendes I, Maguire F, Guthrie JL, Wee BA, Schmedes S, Holt K, Yadav C, Cameron R, Barclay C, Dooley D, MacCannell D, Chindelevitch L, Karsch-Mizrachi I, Waheed Z, Katz L, Petit Iii R, Dave M, Oluniyi P, Nasar MI, Raphenya A, Hsiao WWL, Timme RE. Griffiths EJ, et al. Among authors: schmedes s. Microb Genom. 2024 Jun;10(6):001260. doi: 10.1099/mgen.0.001260. Microb Genom. 2024. PMID: 38860884 Free PMC article.
DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus.
Vogels CBF, Hill V, Breban MI, Chaguza C, Paul LM, Sodeinde A, Taylor-Salmon E, Ott IM, Petrone ME, Dijk D, Jonges M, Welkers MRA, Locksmith T, Dong Y, Tarigopula N, Tekin O, Schmedes S, Bunch S, Cano N, Jaber R, Panzera C, Stryker I, Vergara J, Zimler R, Kopp E, Heberlein L, Herzog KS, Fauver JR, Morrison AM, Michael SF, Grubaugh ND. Vogels CBF, et al. Among authors: schmedes s. BMC Genomics. 2024 May 1;25(1):433. doi: 10.1186/s12864-024-10350-x. BMC Genomics. 2024. PMID: 38693476 Free PMC article.
Concurrent Outbreaks of Hepatitis A, Invasive Meningococcal Disease, and Mpox, Florida, USA, 2021-2022.
Doyle TJ, Gumke M, Stanek D, Moore J, Buck B, Locksmith T, Tomson K, Schmedes S, Churchwell G, Hubsmith SJ, Krishnamoorthy B, Poschman K, Danforth B, Chacreton D; outbreak investigation team1. Doyle TJ, et al. Among authors: schmedes s. Emerg Infect Dis. 2024 Apr;30(4):633-43. doi: 10.3201/eid3004.231392. Emerg Infect Dis. 2024. PMID: 38526187 Free PMC article. Review.
Introduction and Spread of Dengue Virus 3, Florida, USA, May 2022-April 2023.
Jones FK, Morrison AM, Santiago GA, Rysava K, Zimler RA, Heberlein LA, Kopp E; Florida Department of Health Bureau of Public Health Laboratory Team,2; Saunders KE, Baudin S, Rico E, Mejía-Echeverri Á, Taylor-Salmon E, Hill V, Breban MI, Vogels CBF, Grubaugh ND, Paul LM, Michael SF, Johansson MA, Adams LE, Munoz-Jordan J, Paz-Bailey G, Stanek DR; Florida Department of Health Bureau of Public Health Laboratory Team. Jones FK, et al. Emerg Infect Dis. 2024 Feb;30(2):376-379. doi: 10.3201/eid3002.231615. Epub 2024 Jan 17. Emerg Infect Dis. 2024. PMID: 38232709 Free PMC article.
DengueSeq: A pan-serotype whole genome amplicon sequencing protocol for dengue virus.
Vogels CBF, Hill V, Breban MI, Chaguza C, Paul LM, Sodeinde A, Taylor-Salmon E, Ott IM, Petrone ME, Dijk D, Jonges M, Welkers MRA, Locksmith T, Dong Y, Tarigopula N, Tekin O, Schmedes S, Bunch S, Cano N, Jaber R, Panzera C, Stryker I, Vergara J, Zimler R, Kopp E, Heberlein L, Morrison AM, Michael SF, Grubaugh ND. Vogels CBF, et al. Among authors: schmedes s. medRxiv [Preprint]. 2023 Oct 13:2023.10.13.23296997. doi: 10.1101/2023.10.13.23296997. medRxiv. 2023. Update in: BMC Genomics. 2024 May 1;25(1):433. doi: 10.1186/s12864-024-10350-x PMID: 37873191 Free PMC article. Updated. Preprint.
Development of an amplicon-based sequencing approach in response to the global emergence of mpox.
Chen NFG, Chaguza C, Gagne L, Doucette M, Smole S, Buzby E, Hall J, Ash S, Harrington R, Cofsky S, Clancy S, Kapsak CJ, Sevinsky J, Libuit K, Park DJ, Hemarajata P, Garrigues JM, Green NM, Sierra-Patev S, Carpenter-Azevedo K, Huard RC, Pearson C, Incekara K, Nishimura C, Huang JP, Gagnon E, Reever E, Razeq J, Muyombwe A, Borges V, Ferreira R, Sobral D, Duarte S, Santos D, Vieira L, Gomes JP, Aquino C, Savino IM, Felton K, Bajwa M, Hayward N, Miller H, Naumann A, Allman R, Greer N, Fall A, Mostafa HH, McHugh MP, Maloney DM, Dewar R, Kenicer J, Parker A, Mathers K, Wild J, Cotton S, Templeton KE, Churchwell G, Lee PA, Pedrosa M, McGruder B, Schmedes S, Plumb MR, Wang X, Barcellos RB, Godinho FMS, Salvato RS, Ceniseros A, Breban MI, Grubaugh ND, Gallagher GR, Vogels CBF. Chen NFG, et al. Among authors: schmedes s. PLoS Biol. 2023 Jun 13;21(6):e3002151. doi: 10.1371/journal.pbio.3002151. eCollection 2023 Jun. PLoS Biol. 2023. PMID: 37310918 Free PMC article.
Containment of a Verona Integron-Encoded Metallo-Beta-Lactamase-Producing Pseudomonas aeruginosa Outbreak Associated With an Acute Care Hospital Sink-Tennessee, 2018-2020.
Chan A, Thure K, Tobey K, Shugart A, Schmedes S, Burks JA 4th, Hardin H, Moore C, Carpenter T, Brooks S, Gable P, Moulton Meissner H, McAllister G, Lawsin A, Laufer Halpin A, Spalding Walters M, Keaton A. Chan A, et al. Among authors: schmedes s. Open Forum Infect Dis. 2023 Apr 11;10(5):ofad194. doi: 10.1093/ofid/ofad194. eCollection 2023 May. Open Forum Infect Dis. 2023. PMID: 37180588 Free PMC article.
COVID-19 on the Nile: a cross-sectional investigation of COVID-19 among Nile River cruise travellers returning to the United States, February-March 2020.
Guagliardo SAJ, Quilter LAS, Uehara A, White SB, Talarico S, Tong S, Paden CR, Zhang J, Li Y, Pray I, Novak RT, Fukunaga R, Rodriguez A, Medley AM, Wagner R, Weinberg M, Brown CM; US State and Local Departments of Health; Friedman CR. Guagliardo SAJ, et al. J Travel Med. 2023 Jun 23;30(4):taac153. doi: 10.1093/jtm/taac153. J Travel Med. 2023. PMID: 36579822 Free PMC article.
Development of an amplicon-based sequencing approach in response to the global emergence of human monkeypox virus.
Chen NFG, Chaguza C, Gagne L, Doucette M, Smole S, Buzby E, Hall J, Ash S, Harrington R, Cofsky S, Clancy S, Kapsak CJ, Sevinsky J, Libuit K, Park DJ, Hemarajata P, Garrigues JM, Green NM, Sierra-Patev S, Carpenter-Azevedo K, Huard RC, Pearson C, Incekara K, Nishimura C, Huang JP, Gagnon E, Reever E, Razeq J, Muyombwe A, Borges V, Ferreira R, Sobral D, Duarte S, Santos D, Vieira L, Gomes JP, Aquino C, Savino IM, Felton K, Bajwa M, Hayward N, Miller H, Naumann A, Allman R, Greer N, Fall A, Mostafa HH, McHugh MP, Maloney DM, Dewar R, Kenicer J, Parker A, Mathers K, Wild J, Cotton S, Templeton KE, Churchwell G, Lee PA, Pedrosa M, McGruder B, Schmedes S, Plumb MR, Wang X, Barcellos RB, Godinho FMS, Salvato RS, Ceniseros A, Breban MI, Grubaugh ND, Gallagher GR, Vogels CBF. Chen NFG, et al. Among authors: schmedes s. medRxiv [Preprint]. 2023 Jan 13:2022.10.14.22280783. doi: 10.1101/2022.10.14.22280783. medRxiv. 2023. Update in: PLoS Biol. 2023 Jun 13;21(6):e3002151. doi: 10.1371/journal.pbio.3002151 PMID: 36299420 Free PMC article. Updated. Preprint.
32 results