Fiston-Lavier AS - Search Results

1

ISMB/ECCB 2023 organization benefited from the strengths of the French bioinformatics community.

Fiston-Lavier AS, Dérozier S, Perrière G, Sagot MF. Fiston-Lavier AS, et al. Bioinform Adv. 2024 May 3;4(1):vbae040. doi: 10.1093/bioadv/vbae040. eCollection 2024. Bioinform Adv. 2024. PMID: 38721399 Free PMC article. No abstract available.

2

Involving repetitive regions in scaffolding improvement.

Delorme Q, Costa R, Mansour Y, Fiston-Lavier AS, Chateau A. Delorme Q, et al. Among authors: fiston lavier as. J Bioinform Comput Biol. 2021 Dec;19(6):2140016. doi: 10.1142/S0219720021400163. Epub 2021 Dec 17. J Bioinform Comput Biol. 2021. PMID: 34923926

3

BREC: an R package/Shiny app for automatically identifying heterochromatin boundaries and estimating local recombination rates along chromosomes.

Mansour Y, Chateau A, Fiston-Lavier AS. Mansour Y, et al. Among authors: fiston lavier as. BMC Bioinformatics. 2021 Aug 6;22(Suppl 6):396. doi: 10.1186/s12859-021-04233-1. BMC Bioinformatics. 2021. PMID: 34362304 Free PMC article.

4

Finding and Characterizing Repeats in Plant Genomes.

Nicolas J, Tempel S, Fiston-Lavier AS, Cherif E. Nicolas J, et al. Among authors: fiston lavier as. Methods Mol Biol. 2022;2443:327-385. doi: 10.1007/978-1-0716-2067-0_18. Methods Mol Biol. 2022. PMID: 35037215

5

TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches.

Mohamed M, Sabot F, Varoqui M, Mugat B, Audouin K, Pélisson A, Fiston-Lavier AS, Chambeyron S. Mohamed M, et al. Among authors: fiston lavier as. Genome Biol. 2023 Apr 3;24(1):63. doi: 10.1186/s13059-023-02911-2. Genome Biol. 2023. PMID: 37013657 Free PMC article.

6

PlasForest: a homology-based random forest classifier for plasmid detection in genomic datasets.

Pradier L, Tissot T, Fiston-Lavier AS, Bedhomme S. Pradier L, et al. Among authors: fiston lavier as. BMC Bioinformatics. 2021 Jun 26;22(1):349. doi: 10.1186/s12859-021-04270-w. BMC Bioinformatics. 2021. PMID: 34174810 Free PMC article.

7

T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data.

Bogaerts-Márquez M, Barrón MG, Fiston-Lavier AS, Vendrell-Mir P, Castanera R, Casacuberta JM, González J. Bogaerts-Márquez M, et al. Among authors: fiston lavier as. Bioinformatics. 2020 Feb 15;36(4):1191-1197. doi: 10.1093/bioinformatics/btz727. Bioinformatics. 2020. PMID: 31580402 Free PMC article.

8

Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions.

Guignon V, Breton C, Mariette J, Sabot F, Fumey J, Lefort V, Fiston-Lavier AS. Guignon V, et al. Among authors: fiston lavier as. PLoS Comput Biol. 2021 Oct 18;17(10):e1009321. doi: 10.1371/journal.pcbi.1009321. eCollection 2021 Oct. PLoS Comput Biol. 2021. PMID: 34662331 Free PMC article.

9

The somatic piRNA pathway controls germline transposition over generations.

Barckmann B, El-Barouk M, Pélisson A, Mugat B, Li B, Franckhauser C, Fiston Lavier AS, Mirouze M, Fablet M, Chambeyron S. Barckmann B, et al. Nucleic Acids Res. 2018 Oct 12;46(18):9524-9536. doi: 10.1093/nar/gky761. Nucleic Acids Res. 2018. PMID: 30312469 Free PMC article.

10

Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila.

Rech GE, Bogaerts-Márquez M, Barrón MG, Merenciano M, Villanueva-Cañas JL, Horváth V, Fiston-Lavier AS, Luyten I, Venkataram S, Quesneville H, Petrov DA, González J. Rech GE, et al. PLoS Genet. 2019 Feb 12;15(2):e1007900. doi: 10.1371/journal.pgen.1007900. eCollection 2019 Feb. PLoS Genet. 2019. PMID: 30753202 Free PMC article.

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