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SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.
Xie Y, Wu G, Tang J, Luo R, Patterson J, Liu S, Huang W, He G, Gu S, Li S, Zhou X, Lam TW, Li Y, Xu X, Wong GK, Wang J. Xie Y, et al. Among authors: zhou x. Bioinformatics. 2014 Jun 15;30(12):1660-6. doi: 10.1093/bioinformatics/btu077. Epub 2014 Feb 13. Bioinformatics. 2014. PMID: 24532719
Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data.
Stoev P, Komerički A, Akkari N, Liu S, Zhou X, Weigand AM, Hostens J, Hunter CI, Edmunds SC, Porco D, Zapparoli M, Georgiev T, Mietchen D, Roberts D, Faulwetter S, Smith V, Penev L. Stoev P, et al. Among authors: zhou x. Biodivers Data J. 2013 Oct 28;(1):e1013. doi: 10.3897/BDJ.1.e1013. eCollection 2013. Biodivers Data J. 2013. PMID: 24723752 Free PMC article.
Phylogenomics resolves the timing and pattern of insect evolution.
Misof B, Liu S, Meusemann K, Peters RS, Donath A, Mayer C, Frandsen PB, Ware J, Flouri T, Beutel RG, Niehuis O, Petersen M, Izquierdo-Carrasco F, Wappler T, Rust J, Aberer AJ, Aspöck U, Aspöck H, Bartel D, Blanke A, Berger S, Böhm A, Buckley TR, Calcott B, Chen J, Friedrich F, Fukui M, Fujita M, Greve C, Grobe P, Gu S, Huang Y, Jermiin LS, Kawahara AY, Krogmann L, Kubiak M, Lanfear R, Letsch H, Li Y, Li Z, Li J, Lu H, Machida R, Mashimo Y, Kapli P, McKenna DD, Meng G, Nakagaki Y, Navarrete-Heredia JL, Ott M, Ou Y, Pass G, Podsiadlowski L, Pohl H, von Reumont BM, Schütte K, Sekiya K, Shimizu S, Slipinski A, Stamatakis A, Song W, Su X, Szucsich NU, Tan M, Tan X, Tang M, Tang J, Timelthaler G, Tomizuka S, Trautwein M, Tong X, Uchifune T, Walzl MG, Wiegmann BM, Wilbrandt J, Wipfler B, Wong TK, Wu Q, Wu G, Xie Y, Yang S, Yang Q, Yeates DK, Yoshizawa K, Zhang Q, Zhang R, Zhang W, Zhang Y, Zhao J, Zhou C, Zhou L, Ziesmann T, Zou S, Li Y, Xu X, Zhang Y, Yang H, Wang J, Wang J, Kjer KM, Zhou X. Misof B, et al. Among authors: zhou x, zhou c, zhou l. Science. 2014 Nov 7;346(6210):763-7. doi: 10.1126/science.1257570. Epub 2014 Nov 6. Science. 2014. PMID: 25378627
Evolution of neuropeptides in non-pterygote hexapods.
Derst C, Dircksen H, Meusemann K, Zhou X, Liu S, Predel R. Derst C, et al. Among authors: zhou x. BMC Evol Biol. 2016 Feb 29;16:51. doi: 10.1186/s12862-016-0621-4. BMC Evol Biol. 2016. PMID: 26923142 Free PMC article.
Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects : Insect insulator proteins.
Pauli T, Vedder L, Dowling D, Petersen M, Meusemann K, Donath A, Peters RS, Podsiadlowski L, Mayer C, Liu S, Zhou X, Heger P, Wiehe T, Hering L, Mayer G, Misof B, Niehuis O. Pauli T, et al. Among authors: zhou x. BMC Genomics. 2016 Nov 3;17(1):861. doi: 10.1186/s12864-016-3205-1. BMC Genomics. 2016. PMID: 27809783 Free PMC article.
High-throughput monitoring of wild bee diversity and abundance via mitogenomics.
Tang M, Hardman CJ, Ji Y, Meng G, Liu S, Tan M, Yang S, Moss ED, Wang J, Yang C, Bruce C, Nevard T, Potts SG, Zhou X, Yu DW. Tang M, et al. Among authors: zhou x. Methods Ecol Evol. 2015 Sep;6(9):1034-1043. doi: 10.1111/2041-210X.12416. Epub 2015 Jul 6. Methods Ecol Evol. 2015. PMID: 27867467 Free PMC article.
Phylogenetic Origin and Diversification of RNAi Pathway Genes in Insects.
Dowling D, Pauli T, Donath A, Meusemann K, Podsiadlowski L, Petersen M, Peters RS, Mayer C, Liu S, Zhou X, Misof B, Niehuis O. Dowling D, et al. Among authors: zhou x. Genome Biol Evol. 2016 Dec 1;8(12):3784-3793. doi: 10.1093/gbe/evw281. Genome Biol Evol. 2016. PMID: 28062756 Free PMC article.
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