Bryant P - Search Results

1

Structure prediction of protein-ligand complexes from sequence information with Umol.

Bryant P, Kelkar A, Guljas A, Clementi C, Noé F. Bryant P, et al. Nat Commun. 2024 May 28;15(1):4536. doi: 10.1038/s41467-024-48837-6. Nat Commun. 2024. PMID: 38806453 Free PMC article.

2

Improved prediction of protein-protein interactions using AlphaFold2.

Bryant P, Pozzati G, Elofsson A. Bryant P, et al. Nat Commun. 2022 Mar 10;13(1):1265. doi: 10.1038/s41467-022-28865-w. Nat Commun. 2022. PMID: 35273146 Free PMC article.

3

Author Correction: Improved prediction of protein-protein interactions using AlphaFold2.

Bryant P, Pozzati G, Elofsson A. Bryant P, et al. Nat Commun. 2022 Mar 24;13(1):1694. doi: 10.1038/s41467-022-29480-5. Nat Commun. 2022. PMID: 35332153 Free PMC article. No abstract available.

4

Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search.

Bryant P, Pozzati G, Zhu W, Shenoy A, Kundrotas P, Elofsson A. Bryant P, et al. Nat Commun. 2022 Oct 12;13(1):6028. doi: 10.1038/s41467-022-33729-4. Nat Commun. 2022. PMID: 36224222 Free PMC article.

5

Deep learning for protein complex structure prediction.

Bryant P. Bryant P. Curr Opin Struct Biol. 2023 Apr;79:102529. doi: 10.1016/j.sbi.2023.102529. Epub 2023 Jan 31. Curr Opin Struct Biol. 2023. PMID: 36731337 Free article. Review.

6

Peptide binder design with inverse folding and protein structure prediction.

Bryant P, Elofsson A. Bryant P, et al. Commun Chem. 2023 Oct 25;6(1):229. doi: 10.1038/s42004-023-01029-7. Commun Chem. 2023. PMID: 37880344 Free PMC article.

7

Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile.

Bryant P, Noé F. Bryant P, et al. PLoS Comput Biol. 2024 Jul 25;20(7):e1012253. doi: 10.1371/journal.pcbi.1012253. eCollection 2024 Jul. PLoS Comput Biol. 2024. PMID: 39052676 Free PMC article.

8

Structure prediction of alternative protein conformations.

Bryant P, Noé F. Bryant P, et al. Nat Commun. 2024 Aug 26;15(1):7328. doi: 10.1038/s41467-024-51507-2. Nat Commun. 2024. PMID: 39187507 Free PMC article.

9

Decomposing Structural Response Due to Sequence Changes in Protein Domains with Machine Learning.

Bryant P, Elofsson A. Bryant P, et al. J Mol Biol. 2020 Jul 24;432(16):4435-4446. doi: 10.1016/j.jmb.2020.05.021. Epub 2020 May 30. J Mol Biol. 2020. PMID: 32485208 Free article.

10

A structural biology community assessment of AlphaFold2 applications.

Akdel M, Pires DEV, Pardo EP, Jänes J, Zalevsky AO, Mészáros B, Bryant P, Good LL, Laskowski RA, Pozzati G, Shenoy A, Zhu W, Kundrotas P, Serra VR, Rodrigues CHM, Dunham AS, Burke D, Borkakoti N, Velankar S, Frost A, Basquin J, Lindorff-Larsen K, Bateman A, Kajava AV, Valencia A, Ovchinnikov S, Durairaj J, Ascher DB, Thornton JM, Davey NE, Stein A, Elofsson A, Croll TI, Beltrao P. Akdel M, et al. Among authors: bryant p. Nat Struct Mol Biol. 2022 Nov;29(11):1056-1067. doi: 10.1038/s41594-022-00849-w. Epub 2022 Nov 7. Nat Struct Mol Biol. 2022. PMID: 36344848 Free PMC article.

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