Swaney DL - Search Results

1

The Chlamydia trachomatis Inc Tri1 interacts with TRAF7 to displace native TRAF7 interacting partners.

Herrera CM, McMahon E, Swaney DL, Sherry J, Pha K, Adams-Boone K, Johnson JR, Krogan NJ, Stevers M, Solomon D, Elwell C, Engel J. Herrera CM, et al. Among authors: swaney dl. Microbiol Spectr. 2024 Jul 2;12(7):e0045324. doi: 10.1128/spectrum.00453-24. Epub 2024 May 30. Microbiol Spectr. 2024. PMID: 38814079 Free PMC article.

2

Toward defining the phosphoproteome of Xenopus laevis embryos.

McGivern JV, Swaney DL, Coon JJ, Sheets MD. McGivern JV, et al. Among authors: swaney dl. Dev Dyn. 2009 Jun;238(6):1433-43. doi: 10.1002/dvdy.21941. Dev Dyn. 2009. PMID: 19384857 Free PMC article.

3

E2~Ub conjugates regulate the kinase activity of Shigella effector OspG during pathogenesis.

Pruneda JN, Smith FD, Daurie A, Swaney DL, Villén J, Scott JD, Stadnyk AW, Le Trong I, Stenkamp RE, Klevit RE, Rohde JR, Brzovic PS. Pruneda JN, et al. Among authors: swaney dl. EMBO J. 2014 Mar 3;33(5):437-49. doi: 10.1002/embj.201386386. Epub 2014 Jan 20. EMBO J. 2014. PMID: 24446487 Free PMC article.

4

Proteomic and phosphoproteomic comparison of human ES and iPS cells.

Phanstiel DH, Brumbaugh J, Wenger CD, Tian S, Probasco MD, Bailey DJ, Swaney DL, Tervo MA, Bolin JM, Ruotti V, Stewart R, Thomson JA, Coon JJ. Phanstiel DH, et al. Among authors: swaney dl. Nat Methods. 2011 Sep 11;8(10):821-7. doi: 10.1038/nmeth.1699. Nat Methods. 2011. PMID: 21983960 Free PMC article.

5

Value of using multiple proteases for large-scale mass spectrometry-based proteomics.

Swaney DL, Wenger CD, Coon JJ. Swaney DL, et al. J Proteome Res. 2010 Mar 5;9(3):1323-9. doi: 10.1021/pr900863u. J Proteome Res. 2010. PMID: 20113005 Free PMC article.

6

A new probabilistic database search algorithm for ETD spectra.

Sadygov RG, Good DM, Swaney DL, Coon JJ. Sadygov RG, et al. Among authors: swaney dl. J Proteome Res. 2009 Jun;8(6):3198-205. doi: 10.1021/pr900153b. J Proteome Res. 2009. PMID: 19354237 Free PMC article.

7

Enrichment of Modified Peptides via Immunoaffinity Precipitation with Modification-Specific Antibodies.

Swaney DL, Villén J. Swaney DL, et al. Cold Spring Harb Protoc. 2016 Mar 1;2016(3):pdb.prot088013. doi: 10.1101/pdb.prot088013. Cold Spring Harb Protoc. 2016. PMID: 26933248

8

Phosphorylation of ubiquitin at Ser65 affects its polymerization, targets, and proteome-wide turnover.

Swaney DL, Rodríguez-Mias RA, Villén J. Swaney DL, et al. EMBO Rep. 2015 Sep;16(9):1131-44. doi: 10.15252/embr.201540298. Epub 2015 Jul 3. EMBO Rep. 2015. PMID: 26142280 Free PMC article.

9

Deep learning from harmonized peptide libraries enables retention time prediction of diverse post translational modifications.

Wilburn DB, Shannon AE, Spicer V, Richards AL, Yeung D, Swaney DL, Krokhin OV, Searle BC. Wilburn DB, et al. Among authors: swaney dl. bioRxiv [Preprint]. 2023 Jun 2:2023.05.30.542978. doi: 10.1101/2023.05.30.542978. bioRxiv. 2023. PMID: 37398395 Free PMC article. Preprint.

10

Multi-scale photocatalytic proximity labeling reveals cell surface neighbors on and between cells.

Lin Z, Schaefer K, Lui I, Yao Z, Fossati A, Swaney DL, Palar A, Sali A, Wells JA. Lin Z, et al. Among authors: swaney dl. bioRxiv [Preprint]. 2023 Oct 29:2023.10.28.564055. doi: 10.1101/2023.10.28.564055. bioRxiv. 2023. Update in: Science. 2024 Jul 19;385(6706):eadl5763. doi: 10.1126/science.adl5763 PMID: 37961561 Free PMC article. Updated. Preprint.

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