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Page 1
Fine-scale spatial and social patterns of SARS-CoV-2 transmission from identical pathogen sequences.
Tran-Kiem C, Paredes MI, Perofsky AC, Frisbie LA, Xie H, Kong K, Weixler A, Greninger AL, Roychoudhury P, Peterson JM, Delgado A, Halstead H, MacKellar D, Dykema P, Gamboa L, Frazar CD, Ryke E, Stone J, Reinhart D, Starita L, Thibodeau A, Yun C, Aragona F, Black A, Viboud C, Bedford T. Tran-Kiem C, et al. Among authors: paredes mi. medRxiv [Preprint]. 2024 Nov 7:2024.05.24.24307811. doi: 10.1101/2024.05.24.24307811. medRxiv. 2024. PMID: 38826243 Free PMC article. Preprint.
Associations between SARS-CoV-2 variants and risk of COVID-19 hospitalization among confirmed cases in Washington State: a retrospective cohort study.
Paredes MI, Lunn SM, Famulare M, Frisbie LA, Painter I, Burstein R, Roychoudhury P, Xie H, Mohamed Bakhash SA, Perez R, Lukes M, Ellis S, Sathees S, Mathias PC, Greninger A, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, McDermot E, Truong M, Nickerson DA, Bates DL, Hartman ME, Haugen E, Nguyen TN, Richards JD, Rodriguez JL, Stamatoyannopoulos JA, Thorland E, Melly G, Dykema PE, MacKellar DC, Gray HK, Singh A, Peterson JM, Russell D, Torres LM, Lindquist S, Bedford T, Allen KJ, Oltean HN. Paredes MI, et al. medRxiv [Preprint]. 2022 Feb 16:2021.09.29.21264272. doi: 10.1101/2021.09.29.21264272. medRxiv. 2022. Update in: Clin Infect Dis. 2022 Aug 24;75(1):e536-e544. doi: 10.1093/cid/ciac279 PMID: 34729567 Free PMC article. Updated. Preprint.
Local-Scale phylodynamics reveal differential community impact of SARS-CoV-2 in metropolitan US county.
Paredes MI, Perofsky AC, Frisbie L, Moncla LH, Roychoudhury P, Xie H, Mohamed Bakhash SA, Kong K, Arnould I, Nguyen TV, Wendm ST, Hajian P, Ellis S, Mathias PC, Greninger AL, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, Stone J, McDermot E, Truong M, Shendure J, Oltean HN, Viboud C, Chu H, Müller NF, Bedford T. Paredes MI, et al. medRxiv [Preprint]. 2022 Dec 16:2022.12.15.22283536. doi: 10.1101/2022.12.15.22283536. medRxiv. 2022. Update in: PLoS Pathog. 2024 Mar 26;20(3):e1012117. doi: 10.1371/journal.ppat.1012117 PMID: 36561171 Free PMC article. Updated. Preprint.
Local-scale phylodynamics reveal differential community impact of SARS-CoV-2 in a metropolitan US county.
Paredes MI, Perofsky AC, Frisbie L, Moncla LH, Roychoudhury P, Xie H, Bakhash SAM, Kong K, Arnould I, Nguyen TV, Wendm ST, Hajian P, Ellis S, Mathias PC, Greninger AL, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, Stone J, McDermot E, Truong M, Shendure J, Oltean HN, Viboud C, Chu H, Müller NF, Bedford T. Paredes MI, et al. PLoS Pathog. 2024 Mar 26;20(3):e1012117. doi: 10.1371/journal.ppat.1012117. eCollection 2024 Mar. PLoS Pathog. 2024. PMID: 38530853 Free PMC article.
Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in Washington State: A Retrospective Cohort Study.
Paredes MI, Lunn SM, Famulare M, Frisbie LA, Painter I, Burstein R, Roychoudhury P, Xie H, Mohamed Bakhash SA, Perez R, Lukes M, Ellis S, Sathees S, Mathias PC, Greninger A, Starita LM, Frazar CD, Ryke E, Zhong W, Gamboa L, Threlkeld M, Lee J, McDermot E, Truong M, Nickerson DA, Bates DL, Hartman ME, Haugen E, Nguyen TN, Richards JD, Rodriguez JL, Stamatoyannopoulos JA, Thorland E, Melly G, Dykema PE, MacKellar DC, Gray HK, Singh A, Peterson JM, Russell D, Torres LM, Lindquist S, Bedford T, Allen KJ, Oltean HN. Paredes MI, et al. Clin Infect Dis. 2022 Aug 24;75(1):e536-e544. doi: 10.1093/cid/ciac279. Clin Infect Dis. 2022. PMID: 35412591 Free PMC article.
Early underdetected dissemination across countries followed by extensive local transmission propelled the 2022 mpox epidemic.
Paredes MI, Ahmed N, Figgins M, Colizza V, Lemey P, McCrone JT, Müller N, Tran-Kiem C, Bedford T. Paredes MI, et al. medRxiv [Preprint]. 2023 Dec 7:2023.07.27.23293266. doi: 10.1101/2023.07.27.23293266. medRxiv. 2023. Update in: Cell. 2024 Mar 14;187(6):1374-1386.e13. doi: 10.1016/j.cell.2024.02.003 PMID: 37577709 Free PMC article. Updated. Preprint.
The 7q11.23 Protein DNAJC30 Interacts with ATP Synthase and Links Mitochondria to Brain Development.
Tebbenkamp ATN, Varela L, Choi J, Paredes MI, Giani AM, Song JE, Sestan-Pesa M, Franjic D, Sousa AMM, Liu ZW, Li M, Bichsel C, Koch M, Szigeti-Buck K, Liu F, Li Z, Kawasawa YI, Paspalas CD, Mineur YS, Prontera P, Merla G, Picciotto MR, Arnsten AFT, Horvath TL, Sestan N. Tebbenkamp ATN, et al. Among authors: paredes mi. Cell. 2018 Nov 1;175(4):1088-1104.e23. doi: 10.1016/j.cell.2018.09.014. Cell. 2018. PMID: 30318146 Free PMC article.