Cherry JL - Search Results

1

Genomic perspectives on foodborne illness.

Lipman DJ, Cherry JL, Strain E, Agarwala R, Musser SM. Lipman DJ, et al. Among authors: cherry jl. Proc Natl Acad Sci U S A. 2024 Nov 12;121(46):e2411894121. doi: 10.1073/pnas.2411894121. Epub 2024 Nov 5. Proc Natl Acad Sci U S A. 2024. PMID: 39499629 Free PMC article.

2

Gene content, phage cycle regulation model and prophage inactivation disclosed by prophage genomics in the Helicobacter pylori Genome Project.

Vale FF, Roberts RJ, Kobayashi I, Camargo MC, Rabkin CS; HpGP Research Network. Vale FF, et al. Gut Microbes. 2024 Jan-Dec;16(1):2379440. doi: 10.1080/19490976.2024.2379440. Epub 2024 Aug 12. Gut Microbes. 2024. PMID: 39132840 Free PMC article.

3

Genomic perspectives on foodborne illness.

Lipman DJ, Cherry JL, Strain E, Agarwala R, Musser SM. Lipman DJ, et al. Among authors: cherry jl. medRxiv [Preprint]. 2024 May 16:2024.05.16.24307425. doi: 10.1101/2024.05.16.24307425. medRxiv. 2024. Update in: Proc Natl Acad Sci U S A. 2024 Nov 12;121(46):e2411894121. doi: 10.1073/pnas.2411894121 PMID: 38903069 Free PMC article. Updated. Preprint.

4

The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes.

Thorell K, Muñoz-Ramírez ZY, Wang D, Sandoval-Motta S, Boscolo Agostini R, Ghirotto S, Torres RC; HpGP Research Network; Falush D, Camargo MC, Rabkin CS. Thorell K, et al. Nat Commun. 2023 Dec 11;14(1):8184. doi: 10.1038/s41467-023-43562-y. Nat Commun. 2023. PMID: 38081806 Free PMC article.

5

Comparative evolution of influenza A virus H1 and H3 head and stalk domains across host species.

Trovão NS, Khan SM, Lemey P, Nelson MI, Cherry JL. Trovão NS, et al. Among authors: cherry jl. mBio. 2024 Jan 16;15(1):e0264923. doi: 10.1128/mbio.02649-23. Epub 2023 Dec 11. mBio. 2024. PMID: 38078770 Free PMC article.

6

Accelerating Bayesian inference of dependency between mixed-type biological traits.

Zhang Z, Nishimura A, Trovão NS, Cherry JL, Holbrook AJ, Ji X, Lemey P, Suchard MA. Zhang Z, et al. Among authors: cherry jl. PLoS Comput Biol. 2023 Aug 28;19(8):e1011419. doi: 10.1371/journal.pcbi.1011419. eCollection 2023 Aug. PLoS Comput Biol. 2023. PMID: 37639445 Free PMC article.

7

T Residues Preceded by Runs of G Are Hotspots of T→G Mutation in Bacteria.

Cherry JL. Cherry JL. Genome Biol Evol. 2023 Jun 1;15(6):evad087. doi: 10.1093/gbe/evad087. Genome Biol Evol. 2023. PMID: 37216188 Free PMC article.

8

Restriction Endonuclease-Based Modification-Dependent Enrichment (REMoDE) of DNA for Metagenomic Sequencing.

Enam SU, Cherry JL, Leonard SR, Zheludev IN, Lipman DJ, Fire AZ. Enam SU, et al. Among authors: cherry jl. Appl Environ Microbiol. 2023 Jan 31;89(1):e0167022. doi: 10.1128/aem.01670-22. Epub 2022 Dec 15. Appl Environ Microbiol. 2023. PMID: 36519847 Free PMC article.

9

Origins and Evolution of Seasonal Human Coronaviruses.

Otieno JR, Cherry JL, Spiro DJ, Nelson MI, Trovão NS. Otieno JR, et al. Among authors: cherry jl. Viruses. 2022 Jul 15;14(7):1551. doi: 10.3390/v14071551. Viruses. 2022. PMID: 35891531 Free PMC article.

10

Recent Genetic Changes Affecting Enterohemorrhagic Escherichia coli Causing Recurrent Outbreaks.

Cherry JL. Cherry JL. Microbiol Spectr. 2022 Jun 29;10(3):e0050122. doi: 10.1128/spectrum.00501-22. Epub 2022 Apr 25. Microbiol Spectr. 2022. PMID: 35467376 Free PMC article.

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