Theis FJ - Search Results

1

GraphCompass: spatial metrics for differential analyses of cell organization across conditions.

Ali M, Kuijs M, Hediyeh-Zadeh S, Treis T, Hrovatin K, Palla G, Schaar AC, Theis FJ. Ali M, et al. Among authors: theis fj. Bioinformatics. 2024 Jun 28;40(Suppl 1):i548-i557. doi: 10.1093/bioinformatics/btae242. Bioinformatics. 2024. PMID: 38940138 Free PMC article.

2

MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data.

Feigelman J, Theis FJ, Marr C. Feigelman J, et al. Among authors: theis fj. BMC Bioinformatics. 2014 Jul 11;15:240. doi: 10.1186/1471-2105-15-240. BMC Bioinformatics. 2014. PMID: 25015590 Free PMC article.

3

RAMONA: a Web application for gene set analysis on multilevel omics data.

Sass S, Buettner F, Mueller NS, Theis FJ. Sass S, et al. Among authors: theis fj. Bioinformatics. 2015 Jan 1;31(1):128-30. doi: 10.1093/bioinformatics/btu610. Epub 2014 Sep 18. Bioinformatics. 2015. PMID: 25236464

4

Diffusion maps for high-dimensional single-cell analysis of differentiation data.

Haghverdi L, Buettner F, Theis FJ. Haghverdi L, et al. Among authors: theis fj. Bioinformatics. 2015 Sep 15;31(18):2989-98. doi: 10.1093/bioinformatics/btv325. Epub 2015 May 21. Bioinformatics. 2015. PMID: 26002886

5

Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data.

Ocone A, Haghverdi L, Mueller NS, Theis FJ. Ocone A, et al. Among authors: theis fj. Bioinformatics. 2015 Jun 15;31(12):i89-96. doi: 10.1093/bioinformatics/btv257. Bioinformatics. 2015. PMID: 26072513 Free PMC article.

6

destiny: diffusion maps for large-scale single-cell data in R.

Angerer P, Haghverdi L, Büttner M, Theis FJ, Marr C, Buettner F. Angerer P, et al. Among authors: theis fj. Bioinformatics. 2016 Apr 15;32(8):1241-3. doi: 10.1093/bioinformatics/btv715. Epub 2015 Dec 14. Bioinformatics. 2016. PMID: 26668002

7

MEMO: multi-experiment mixture model analysis of censored data.

Geissen EM, Hasenauer J, Heinrich S, Hauf S, Theis FJ, Radde NE. Geissen EM, et al. Among authors: theis fj. Bioinformatics. 2016 Aug 15;32(16):2464-72. doi: 10.1093/bioinformatics/btw190. Epub 2016 Apr 19. Bioinformatics. 2016. PMID: 27153627 Free PMC article.

8

Parameter estimation for dynamical systems with discrete events and logical operations.

Fröhlich F, Theis FJ, Rädler JO, Hasenauer J. Fröhlich F, et al. Among authors: theis fj. Bioinformatics. 2017 Apr 1;33(7):1049-1056. doi: 10.1093/bioinformatics/btw764. Bioinformatics. 2017. PMID: 28040696

9

Model-based branching point detection in single-cell data by K-branches clustering.

Chlis NK, Wolf FA, Theis FJ. Chlis NK, et al. Among authors: theis fj. Bioinformatics. 2017 Oct 15;33(20):3211-3219. doi: 10.1093/bioinformatics/btx325. Bioinformatics. 2017. PMID: 28582478 Free PMC article.

10

netReg: network-regularized linear models for biological association studies.

Dirmeier S, Fuchs C, Mueller NS, Theis FJ. Dirmeier S, et al. Among authors: theis fj. Bioinformatics. 2018 Mar 1;34(5):896-898. doi: 10.1093/bioinformatics/btx677. Bioinformatics. 2018. PMID: 29077797 Free PMC article.

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