Graber JH - Search Results

1

A cloud-based training module for efficient de novo transcriptome assembly using Nextflow and Google cloud.

Seaman RP, Campbell R, Doe V, Yosufzai Z, Graber JH. Seaman RP, et al. Among authors: graber jh. Brief Bioinform. 2024 May 23;25(4):bbae313. doi: 10.1093/bib/bbae313. Brief Bioinform. 2024. PMID: 38941113 Free PMC article.

2

Interrogating the transcriptome of oocytes and preimplantation embryos.

Peaston AE, Graber JH, Knowles BB, de Vries WN. Peaston AE, et al. Among authors: graber jh. Methods Enzymol. 2010;477:481-510. doi: 10.1016/S0076-6879(10)77024-5. Methods Enzymol. 2010. PMID: 20699156

3

Position-dependent motif characterization using non-negative matrix factorization.

Hutchins LN, Murphy SM, Singh P, Graber JH. Hutchins LN, et al. Among authors: graber jh. Bioinformatics. 2008 Dec 1;24(23):2684-90. doi: 10.1093/bioinformatics/btn526. Epub 2008 Oct 13. Bioinformatics. 2008. PMID: 18852176 Free PMC article.

4

An expanded mouse testis transcriptome and mass spectrometry defines novel proteins.

Gamble J, Chick J, Seltzer K, Graber JH, Gygi S, Braun RE, Snyder EM. Gamble J, et al. Among authors: graber jh. Reproduction. 2020 Jan;159(1):15-26. doi: 10.1530/REP-19-0092. Reproduction. 2020. PMID: 31677600 Free PMC article.

5

PACdb: PolyA Cleavage Site and 3'-UTR Database.

Brockman JM, Singh P, Liu D, Quinlan S, Salisbury J, Graber JH. Brockman JM, et al. Among authors: graber jh. Bioinformatics. 2005 Sep 15;21(18):3691-3. doi: 10.1093/bioinformatics/bti589. Epub 2005 Jul 19. Bioinformatics. 2005. PMID: 16030070

6

Reference Trait Analysis Reveals Correlations Between Gene Expression and Quantitative Traits in Disjoint Samples.

Skelly DA, Raghupathy N, Robledo RF, Graber JH, Chesler EJ. Skelly DA, et al. Among authors: graber jh. Genetics. 2019 Jul;212(3):919-929. doi: 10.1534/genetics.118.301865. Epub 2019 May 21. Genetics. 2019. PMID: 31113812 Free PMC article.

7

Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines.

Woo XY, Srivastava A, Graber JH, Yadav V, Sarsani VK, Simons A, Beane G, Grubb S, Ananda G, Liu R, Stafford G, Chuang JH, Airhart SD, Karuturi RKM, George J, Bult CJ. Woo XY, et al. Among authors: graber jh. BMC Med Genomics. 2019 Jul 1;12(1):92. doi: 10.1186/s12920-019-0551-2. BMC Med Genomics. 2019. PMID: 31262303 Free PMC article.

8

Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation.

Liu D, Graber JH. Liu D, et al. Among authors: graber jh. BMC Bioinformatics. 2006 Feb 17;7:77. doi: 10.1186/1471-2105-7-77. BMC Bioinformatics. 2006. PMID: 16503995 Free PMC article.

9

Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo.

Evsikov AV, Graber JH, Brockman JM, Hampl A, Holbrook AE, Singh P, Eppig JJ, Solter D, Knowles BB. Evsikov AV, et al. Among authors: graber jh. Genes Dev. 2006 Oct 1;20(19):2713-27. doi: 10.1101/gad.1471006. Genes Dev. 2006. PMID: 17015433 Free PMC article.

10

Mutant KLF1 in Adult Anemic Nan Mice Leads to Profound Transcriptome Changes and Disordered Erythropoiesis.

Nébor D, Graber JH, Ciciotte SL, Robledo RF, Papoin J, Hartman E, Gillinder KR, Perkins AC, Bieker JJ, Blanc L, Peters LL. Nébor D, et al. Among authors: graber jh. Sci Rep. 2018 Aug 24;8(1):12793. doi: 10.1038/s41598-018-30839-2. Sci Rep. 2018. PMID: 30143664 Free PMC article.

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