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Exploring single-cell data with deep multitasking neural networks.
Amodio M, van Dijk D, Srinivasan K, Chen WS, Mohsen H, Moon KR, Campbell A, Zhao Y, Wang X, Venkataswamy M, Desai A, Ravi V, Kumar P, Montgomery R, Wolf G, Krishnaswamy S. Amodio M, et al. Among authors: krishnaswamy s. Nat Methods. 2019 Nov;16(11):1139-1145. doi: 10.1038/s41592-019-0576-7. Epub 2019 Oct 7. Nat Methods. 2019. PMID: 31591579 Free PMC article.
LEARNING GENERAL TRANSFORMATIONS OF DATA FOR OUT-OF-SAMPLE EXTENSIONS.
Amodio M, van Dijk D, Wolf G, Krishnaswamy S. Amodio M, et al. Among authors: krishnaswamy s. IEEE Int Workshop Mach Learn Signal Process. 2020 Sep;2020:10.1109/mlsp49062.2020.9231660. doi: 10.1109/mlsp49062.2020.9231660. Epub 2020 Oct 20. IEEE Int Workshop Mach Learn Signal Process. 2020. PMID: 34557339 Free PMC article.
Single cell immune profiling of dengue virus patients reveals intact immune responses to Zika virus with enrichment of innate immune signatures.
Zhao Y, Amodio M, Vander Wyk B, Gerritsen B, Kumar MM, van Dijk D, Moon K, Wang X, Malawista A, Richards MM, Cahill ME, Desai A, Sivadasan J, Venkataswamy MM, Ravi V, Fikrig E, Kumar P, Kleinstein SH, Krishnaswamy S, Montgomery RR. Zhao Y, et al. Among authors: krishnaswamy s. PLoS Negl Trop Dis. 2020 Mar 9;14(3):e0008112. doi: 10.1371/journal.pntd.0008112. eCollection 2020 Mar. PLoS Negl Trop Dis. 2020. PMID: 32150565 Free PMC article.
Interpretable Neuron Structuring with Graph Spectral Regularization.
Tong A, van Dijk D, Stanley JS 3rd, Amodio M, Yim K, Muhle R, Noonan J, Wolf G, Krishnaswamy S. Tong A, et al. Among authors: krishnaswamy s. Adv Intell Data Anal. 2020 Apr;12080:509-521. doi: 10.1007/978-3-030-44584-3_40. Epub 2020 Apr 22. Adv Intell Data Anal. 2020. PMID: 34131660 Free PMC article.
PD-1 maintains CD8 T cell tolerance towards cutaneous neoantigens.
Damo M, Hornick NI, Venkat A, William I, Clulo K, Venkatesan S, He J, Fagerberg E, Loza JL, Kwok D, Tal A, Buck J, Cui C, Singh J, Damsky WE, Leventhal JS, Krishnaswamy S, Joshi NS. Damo M, et al. Among authors: krishnaswamy s. Nature. 2023 Jul;619(7968):151-159. doi: 10.1038/s41586-023-06217-y. Epub 2023 Jun 21. Nature. 2023. PMID: 37344588 Free PMC article.
A reservoir of stem-like CD8+ T cells in the tumor-draining lymph node preserves the ongoing antitumor immune response.
Connolly KA, Kuchroo M, Venkat A, Khatun A, Wang J, William I, Hornick NI, Fitzgerald BL, Damo M, Kasmani MY, Cui C, Fagerberg E, Monroy I, Hutchins A, Cheung JF, Foster GG, Mariuzza DL, Nader M, Zhao H, Cui W, Krishnaswamy S, Joshi NS. Connolly KA, et al. Among authors: krishnaswamy s. Sci Immunol. 2021 Oct;6(64):eabg7836. doi: 10.1126/sciimmunol.abg7836. Epub 2021 Sep 2. Sci Immunol. 2021. PMID: 34597124 Free PMC article.
458 results