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Improved Characterization of Soil Organic Matter by Integrating FT-ICR MS, Liquid Chromatography Tandem Mass Spectrometry, and Molecular Networking: A Case Study of Root Litter Decay under Drought Conditions.
DiDonato N, Rivas-Ubach A, Kew W, Sokol NW, Clendinen CS, Kyle JE, Martínez CE, Foley MM, Tolić N, Pett-Ridge J, Paša-Tolić L. DiDonato N, et al. Among authors: kyle je. Anal Chem. 2024 Jul 23;96(29):11699-11706. doi: 10.1021/acs.analchem.4c00184. Epub 2024 Jul 11. Anal Chem. 2024. PMID: 38991201
PeakQC: A Software Tool for Omics-Agnostic Automated Quality Control of Mass Spectrometry Data.
Harrison A, Eder JG, Lalli PM, Munoz N, Gao Y, Clendinen CS, Orton DJ, Zheng X, Williams SM, Couvillion SP, Chu RK, Balasubramanian VK, Bhattacharjee A, Anderton CR, Pomraning KR, Burnum-Johnson KE, Liu T, Kyle JE, Bilbao A. Harrison A, et al. Among authors: kyle je. J Am Soc Mass Spectrom. 2024 Nov 6;35(11):2680-2689. doi: 10.1021/jasms.4c00146. Epub 2024 Jul 16. J Am Soc Mass Spectrom. 2024. PMID: 39013167
Metabolomic, photoprotective, and photosynthetic acclimatory responses to post-flowering drought in sorghum.
Baker CR, Patel-Tupper D, Cole BJ, Ching LG, Dautermann O, Kelikian AC, Allison C, Pedraza J, Sievert J, Bilbao A, Lee JY, Kim YM, Kyle JE, Bloodsworth KJ, Paurus V, Hixson KK, Hutmacher R, Dahlberg J, Lemaux PG, Niyogi KK. Baker CR, et al. Among authors: kyle je. Plant Direct. 2023 Nov 13;7(11):e545. doi: 10.1002/pld3.545. eCollection 2023 Nov. Plant Direct. 2023. PMID: 37965197 Free PMC article.
Environment-specific virocell metabolic reprogramming.
Howard-Varona C, Lindback MM, Fudyma JD, Krongauz A, Solonenko NE, Zayed AA, Andreopoulos WB, Olson HM, Kim YM, Kyle JE, Glavina Del Rio T, Adkins JN, Tfaily MM, Paul S, Sullivan MB, Duhaime MB. Howard-Varona C, et al. Among authors: kyle je. ISME J. 2024 Jan 8;18(1):wrae055. doi: 10.1093/ismejo/wrae055. ISME J. 2024. PMID: 38552150 Free PMC article.
Deciphering ApoE Genotype-Driven Proteomic and Lipidomic Alterations in Alzheimer's Disease Across Distinct Brain Regions.
Odenkirk MT, Zheng X, Kyle JE, Stratton KG, Nicora CD, Bloodsworth KJ, Mclean CA, Masters CL, Monroe ME, Doecke JD, Smith RD, Burnum-Johnson KE, Roberts BR, Baker ES. Odenkirk MT, et al. Among authors: kyle je. J Proteome Res. 2024 Aug 2;23(8):2970-2985. doi: 10.1021/acs.jproteome.3c00604. Epub 2024 Jan 18. J Proteome Res. 2024. PMID: 38236019 Free PMC article.
Multi-scale signaling and tumor evolution in high-grade gliomas.
Liu J, Cao S, Imbach KJ, Gritsenko MA, Lih TM, Kyle JE, Yaron-Barir TM, Binder ZA, Li Y, Strunilin I, Wang YT, Tsai CF, Ma W, Chen L, Clark NM, Shinkle A, Naser Al Deen N, Caravan W, Houston A, Simin FA, Wyczalkowski MA, Wang LB, Storrs E, Chen S, Illindala R, Li YD, Jayasinghe RG, Rykunov D, Cottingham SL, Chu RK, Weitz KK, Moore RJ, Sagendorf T, Petyuk VA, Nestor M, Bramer LM, Stratton KG, Schepmoes AA, Couvillion SP, Eder J, Kim YM, Gao Y, Fillmore TL, Zhao R, Monroe ME, Southard-Smith AN, Li YE, Jui-Hsien Lu R, Johnson JL, Wiznerowicz M, Hostetter G, Newton CJ, Ketchum KA, Thangudu RR, Barnholtz-Sloan JS, Wang P, Fenyö D, An E, Thiagarajan M, Robles AI, Mani DR, Smith RD, Porta-Pardo E, Cantley LC, Iavarone A, Chen F, Mesri M, Nasrallah MP, Zhang H, Resnick AC, Chheda MG, Rodland KD, Liu T, Ding L; Philadelphia Coalition for a Cure; Clinical Proteomic Tumor Analysis Consortium. Liu J, et al. Among authors: kyle je. Cancer Cell. 2024 Jul 8;42(7):1217-1238.e19. doi: 10.1016/j.ccell.2024.06.004. Cancer Cell. 2024. PMID: 38981438 Free article.
Elucidating regulatory processes of intense physical activity by multi-omics analysis.
Nakayasu ES, Gritsenko MA, Kim YM, Kyle JE, Stratton KG, Nicora CD, Munoz N, Navarro KM, Claborne D, Gao Y, Weitz KK, Paurus VL, Bloodsworth KJ, Allen KA, Bramer LM, Montes F, Clark KA, Tietje G, Teeguarden J, Burnum-Johnson KE. Nakayasu ES, et al. Among authors: kyle je. Mil Med Res. 2023 Oct 18;10(1):48. doi: 10.1186/s40779-023-00477-5. Mil Med Res. 2023. PMID: 37853489 Free PMC article.
Human cerebrospinal fluid contains diverse lipoprotein subspecies enriched in proteins implicated in central nervous system health.
Merrill NJ, Davidson WS, He Y, Díaz Ludovico I, Sarkar S, Berger MR, McDermott JE, Van Eldik LJ, Wilcock DM, Monroe ME, Kyle JE, Bruce KD, Heinecke JW, Vaisar T, Raber J, Quinn JF, Melchior JT. Merrill NJ, et al. Among authors: kyle je. Sci Adv. 2023 Sep;9(35):eadi5571. doi: 10.1126/sciadv.adi5571. Epub 2023 Aug 30. Sci Adv. 2023. PMID: 37647397 Free PMC article.
99 results