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Likelihood-based interactive local docking into cryo-EM maps in ChimeraX.
Read RJ, Pettersen EF, McCoy AJ, Croll TI, Terwilliger TC, Poon BK, Meng EC, Liebschner D, Adams PD. Read RJ, et al. Among authors: adams pd. Acta Crystallogr D Struct Biol. 2024 Aug 1;80(Pt 8):588-598. doi: 10.1107/S2059798324006776. Epub 2024 Jul 26. Acta Crystallogr D Struct Biol. 2024. PMID: 39058381 Free PMC article.
Polder maps: improving OMIT maps by excluding bulk solvent.
Liebschner D, Afonine PV, Moriarty NW, Poon BK, Sobolev OV, Terwilliger TC, Adams PD. Liebschner D, et al. Among authors: adams pd. Acta Crystallogr D Struct Biol. 2017 Feb 1;73(Pt 2):148-157. doi: 10.1107/S2059798316018210. Epub 2017 Feb 1. Acta Crystallogr D Struct Biol. 2017. PMID: 28177311 Free PMC article.
Real-space refinement in PHENIX for cryo-EM and crystallography.
Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. Afonine PV, et al. Among authors: adams pd. Acta Crystallogr D Struct Biol. 2018 Jun 1;74(Pt 6):531-544. doi: 10.1107/S2059798318006551. Epub 2018 May 30. Acta Crystallogr D Struct Biol. 2018. PMID: 29872004 Free PMC article.
New tools for the analysis and validation of cryo-EM maps and atomic models.
Afonine PV, Klaholz BP, Moriarty NW, Poon BK, Sobolev OV, Terwilliger TC, Adams PD, Urzhumtsev A. Afonine PV, et al. Among authors: adams pd. Acta Crystallogr D Struct Biol. 2018 Sep 1;74(Pt 9):814-840. doi: 10.1107/S2059798318009324. Epub 2018 Sep 3. Acta Crystallogr D Struct Biol. 2018. PMID: 30198894 Free PMC article.
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.
Liebschner D, Afonine PV, Baker ML, Bunkóczi G, Chen VB, Croll TI, Hintze B, Hung LW, Jain S, McCoy AJ, Moriarty NW, Oeffner RD, Poon BK, Prisant MG, Read RJ, Richardson JS, Richardson DC, Sammito MD, Sobolev OV, Stockwell DH, Terwilliger TC, Urzhumtsev AG, Videau LL, Williams CJ, Adams PD. Liebschner D, et al. Among authors: adams pd. Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877. doi: 10.1107/S2059798319011471. Epub 2019 Oct 2. Acta Crystallogr D Struct Biol. 2019. PMID: 31588918 Free PMC article.
Density modification of cryo-EM maps.
Terwilliger TC, Sobolev OV, Afonine PV, Adams PD, Read RJ. Terwilliger TC, et al. Among authors: adams pd. Acta Crystallogr D Struct Biol. 2020 Oct 1;76(Pt 10):912-925. doi: 10.1107/S205979832001061X. Epub 2020 Sep 22. Acta Crystallogr D Struct Biol. 2020. PMID: 33021493 Free PMC article.
In situ ligand restraints from quantum-mechanical methods.
Liebschner D, Moriarty NW, Poon BK, Adams PD. Liebschner D, et al. Among authors: adams pd. Acta Crystallogr D Struct Biol. 2023 Feb 1;79(Pt 2):100-110. doi: 10.1107/S2059798323000025. Epub 2023 Jan 20. Acta Crystallogr D Struct Biol. 2023. PMID: 36762856 Free PMC article.
507 results