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Page 1
Likelihood-based interactive local docking into cryo-EM maps in ChimeraX.
Read RJ, Pettersen EF, McCoy AJ, Croll TI, Terwilliger TC, Poon BK, Meng EC, Liebschner D, Adams PD. Read RJ, et al. Among authors: poon bk. Acta Crystallogr D Struct Biol. 2024 Aug 1;80(Pt 8):588-598. doi: 10.1107/S2059798324006776. Epub 2024 Jul 26. Acta Crystallogr D Struct Biol. 2024. PMID: 39058381 Free PMC article.
Polder maps: improving OMIT maps by excluding bulk solvent.
Liebschner D, Afonine PV, Moriarty NW, Poon BK, Sobolev OV, Terwilliger TC, Adams PD. Liebschner D, et al. Among authors: poon bk. Acta Crystallogr D Struct Biol. 2017 Feb 1;73(Pt 2):148-157. doi: 10.1107/S2059798316018210. Epub 2017 Feb 1. Acta Crystallogr D Struct Biol. 2017. PMID: 28177311 Free PMC article.
Real-space refinement in PHENIX for cryo-EM and crystallography.
Afonine PV, Poon BK, Read RJ, Sobolev OV, Terwilliger TC, Urzhumtsev A, Adams PD. Afonine PV, et al. Among authors: poon bk. Acta Crystallogr D Struct Biol. 2018 Jun 1;74(Pt 6):531-544. doi: 10.1107/S2059798318006551. Epub 2018 May 30. Acta Crystallogr D Struct Biol. 2018. PMID: 29872004 Free PMC article.
New tools for the analysis and validation of cryo-EM maps and atomic models.
Afonine PV, Klaholz BP, Moriarty NW, Poon BK, Sobolev OV, Terwilliger TC, Adams PD, Urzhumtsev A. Afonine PV, et al. Among authors: poon bk. Acta Crystallogr D Struct Biol. 2018 Sep 1;74(Pt 9):814-840. doi: 10.1107/S2059798318009324. Epub 2018 Sep 3. Acta Crystallogr D Struct Biol. 2018. PMID: 30198894 Free PMC article.
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.
Liebschner D, Afonine PV, Baker ML, Bunkóczi G, Chen VB, Croll TI, Hintze B, Hung LW, Jain S, McCoy AJ, Moriarty NW, Oeffner RD, Poon BK, Prisant MG, Read RJ, Richardson JS, Richardson DC, Sammito MD, Sobolev OV, Stockwell DH, Terwilliger TC, Urzhumtsev AG, Videau LL, Williams CJ, Adams PD. Liebschner D, et al. Among authors: poon bk. Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877. doi: 10.1107/S2059798319011471. Epub 2019 Oct 2. Acta Crystallogr D Struct Biol. 2019. PMID: 31588918 Free PMC article.
Putting AlphaFold models to work with phenix.process_predicted_model and ISOLDE.
Oeffner RD, Croll TI, Millán C, Poon BK, Schlicksup CJ, Read RJ, Terwilliger TC. Oeffner RD, et al. Among authors: poon bk. Acta Crystallogr D Struct Biol. 2022 Nov 1;78(Pt 11):1303-1314. doi: 10.1107/S2059798322010026. Epub 2022 Oct 27. Acta Crystallogr D Struct Biol. 2022. PMID: 36322415 Free PMC article.
In situ ligand restraints from quantum-mechanical methods.
Liebschner D, Moriarty NW, Poon BK, Adams PD. Liebschner D, et al. Among authors: poon bk. Acta Crystallogr D Struct Biol. 2023 Feb 1;79(Pt 2):100-110. doi: 10.1107/S2059798323000025. Epub 2023 Jan 20. Acta Crystallogr D Struct Biol. 2023. PMID: 36762856 Free PMC article.
Accelerating crystal structure determination with iterative AlphaFold prediction.
Terwilliger TC, Afonine PV, Liebschner D, Croll TI, McCoy AJ, Oeffner RD, Williams CJ, Poon BK, Richardson JS, Read RJ, Adams PD. Terwilliger TC, et al. Among authors: poon bk. Acta Crystallogr D Struct Biol. 2023 Mar 1;79(Pt 3):234-244. doi: 10.1107/S205979832300102X. Epub 2023 Feb 27. Acta Crystallogr D Struct Biol. 2023. PMID: 36876433 Free PMC article.
Improved joint X-ray and neutron refinement procedure in Phenix.
Liebschner D, Afonine PV, Poon BK, Moriarty NW, Adams PD. Liebschner D, et al. Among authors: poon bk. Acta Crystallogr D Struct Biol. 2023 Dec 1;79(Pt 12):1079-1093. doi: 10.1107/S2059798323008914. Epub 2023 Nov 9. Acta Crystallogr D Struct Biol. 2023. PMID: 37942718 Free PMC article.
33 results