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Page 1
Solving genomic puzzles: computational methods for metagenomic binning.
Mallawaarachchi V, Wickramarachchi A, Xue H, Papudeshi B, Grigson SR, Bouras G, Prahl RE, Kaphle A, Verich A, Talamantes-Becerra B, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Among authors: dinsdale ea. Brief Bioinform. 2024 Jul 25;25(5):bbae372. doi: 10.1093/bib/bbae372. Brief Bioinform. 2024. PMID: 39082646 Free PMC article. Review.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Among authors: dinsdale ea. Bioinformatics. 2023 Oct 3;39(10):btad586. doi: 10.1093/bioinformatics/btad586. Bioinformatics. 2023. PMID: 37738590 Free PMC article.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Among authors: dinsdale ea. bioRxiv [Preprint]. 2023 Sep 11:2023.04.04.535632. doi: 10.1101/2023.04.04.535632. bioRxiv. 2023. Update in: Bioinformatics. 2023 Oct 3;39(10):btad586. doi: 10.1093/bioinformatics/btad586 PMID: 37066369 Free PMC article. Updated. Preprint.
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2.
Papudeshi B, Vega AA, Souza C, Giles SK, Mallawaarachchi V, Roach MJ, An M, Jacobson N, McNair K, Mora MF, Pastrana K, Boling L, Leigh C, Harker C, Plewa WS, Grigson SR, Bouras G, Decewicz P, Luque A, Droit L, Handley SA, Wang D, Segall AM, Dinsdale EA, Edwards RA. Papudeshi B, et al. Among authors: dinsdale ea. bioRxiv [Preprint]. 2023 Jul 26:2023.03.05.531146. doi: 10.1101/2023.03.05.531146. bioRxiv. 2023. Update in: Microb Genom. 2023 Sep;9(9). doi: 10.1099/mgen.0.001100 PMID: 36945541 Free PMC article. Updated. Preprint.
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2.
Papudeshi B, Vega AA, Souza C, Giles SK, Mallawaarachchi V, Roach MJ, An M, Jacobson N, McNair K, Fernanda Mora M, Pastrana K, Boling L, Leigh C, Harker C, Plewa WS, Grigson SR, Bouras G, Decewicz P, Luque A, Droit L, Handley SA, Wang D, Segall AM, Dinsdale EA, Edwards RA. Papudeshi B, et al. Among authors: dinsdale ea. Microb Genom. 2023 Sep;9(9):001100. doi: 10.1099/mgen.0.001100. Microb Genom. 2023. PMID: 37665209 Free PMC article.
Hecatomb: an integrated software platform for viral metagenomics.
Roach MJ, Beecroft SJ, Mihindukulasuriya KA, Wang L, Paredes A, Cárdenas LAC, Henry-Cocks K, Lima LFO, Dinsdale EA, Edwards RA, Handley SA. Roach MJ, et al. Among authors: dinsdale ea. Gigascience. 2024 Jan 2;13:giae020. doi: 10.1093/gigascience/giae020. Gigascience. 2024. PMID: 38832467 Free PMC article.
Stingray epidermal microbiomes are species-specific with local adaptations.
Kerr EN, Papudeshi B, Haggerty M, Wild N, Goodman AZ, Lima LFO, Hesse RD, Skye A, Mallawaarachchi V, Johri S, Parker S, Dinsdale EA. Kerr EN, et al. Among authors: dinsdale ea. Front Microbiol. 2023 Mar 2;14:1031711. doi: 10.3389/fmicb.2023.1031711. eCollection 2023. Front Microbiol. 2023. PMID: 36937279 Free PMC article.
The Promise and Pitfalls of Prophages.
McKerral JC, Papudeshi B, Inglis LK, Roach MJ, Decewicz P, McNair K, Luque A, Dinsdale EA, Edwards RA. McKerral JC, et al. Among authors: dinsdale ea. bioRxiv [Preprint]. 2023 Apr 21:2023.04.20.537752. doi: 10.1101/2023.04.20.537752. bioRxiv. 2023. PMID: 37131798 Free PMC article. Preprint.
80 results