Krishnan A - Search Results

1

Computational strategies for cross-species knowledge transfer and translational biomedicine.

Yuan H, Mancuso CA, Johnson K, Braasch I, Krishnan A. Yuan H, et al. Among authors: krishnan a. ArXiv [Preprint]. 2024 Aug 16:arXiv:2408.08503v1. ArXiv. 2024. PMID: 39184546 Free PMC article. Preprint.

2

Joint representation of molecular networks from multiple species improves gene classification.

Mancuso CA, Johnson KA, Liu R, Krishnan A. Mancuso CA, et al. Among authors: krishnan a. PLoS Comput Biol. 2024 Jan 10;20(1):e1011773. doi: 10.1371/journal.pcbi.1011773. eCollection 2024 Jan. PLoS Comput Biol. 2024. PMID: 38198480 Free PMC article.

3

A flexible, interpretable, and accurate approach for imputing the expression of unmeasured genes.

Mancuso CA, Canfield JL, Singla D, Krishnan A. Mancuso CA, et al. Among authors: krishnan a. Nucleic Acids Res. 2020 Dec 2;48(21):e125. doi: 10.1093/nar/gkaa881. Nucleic Acids Res. 2020. PMID: 33074331 Free PMC article.

4

PyGenePlexus: a Python package for gene discovery using network-based machine learning.

Mancuso CA, Liu R, Krishnan A. Mancuso CA, et al. Among authors: krishnan a. Bioinformatics. 2023 Feb 3;39(2):btad064. doi: 10.1093/bioinformatics/btad064. Bioinformatics. 2023. PMID: 36721325 Free PMC article.

5

Supervised learning is an accurate method for network-based gene classification.

Liu R, Mancuso CA, Yannakopoulos A, Johnson KA, Krishnan A. Liu R, et al. Among authors: krishnan a. Bioinformatics. 2020 Jun 1;36(11):3457-3465. doi: 10.1093/bioinformatics/btaa150. Bioinformatics. 2020. PMID: 32129827 Free PMC article.

6

Robust normalization and transformation techniques for constructing gene coexpression networks from RNA-seq data.

Johnson KA, Krishnan A. Johnson KA, et al. Among authors: krishnan a. Genome Biol. 2022 Jan 3;23(1):1. doi: 10.1186/s13059-021-02568-9. Genome Biol. 2022. PMID: 34980209 Free PMC article.

7

A network-based approach for isolating the chronic inflammation gene signatures underlying complex diseases towards finding new treatment opportunities.

Hickey SL, McKim A, Mancuso CA, Krishnan A. Hickey SL, et al. Among authors: krishnan a. Front Pharmacol. 2022 Oct 12;13:995459. doi: 10.3389/fphar.2022.995459. eCollection 2022. Front Pharmacol. 2022. PMID: 36313344 Free PMC article.

8

GenePlexus: a web-server for gene discovery using network-based machine learning.

Mancuso CA, Bills PS, Krum D, Newsted J, Liu R, Krishnan A. Mancuso CA, et al. Among authors: krishnan a. Nucleic Acids Res. 2022 Jul 5;50(W1):W358-W366. doi: 10.1093/nar/gkac335. Nucleic Acids Res. 2022. PMID: 35580053 Free PMC article.

9

Effective remote clinical teaching: leveraging technology to improve Radiology Case readouts.

Al-Katib S, Dearden A, Shetty M, Swantek A, Khan M, Ghannam J, Beydoun A, Kolderman N, Nandalur K, Krishnan A. Al-Katib S, et al. Among authors: krishnan a. Abdom Radiol (NY). 2024 Dec 10. doi: 10.1007/s00261-024-04740-8. Online ahead of print. Abdom Radiol (NY). 2024. PMID: 39656312 Review.

10

An explainable deep learning platform for molecular discovery.

Wong F, Omori S, Li A, Krishnan A, Lach RS, Rufo J, Wilson MZ, Collins JJ. Wong F, et al. Among authors: krishnan a. Nat Protoc. 2024 Dec 9. doi: 10.1038/s41596-024-01084-x. Online ahead of print. Nat Protoc. 2024. PMID: 39653800 Review.

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