Kmiecik S - Search Results

1

Exploring protein functions from structural flexibility using CABS-flex modeling.

Nithin C, Fornari RP, Pilla SP, Wroblewski K, Zalewski M, Madaj R, Kolinski A, Macnar JM, Kmiecik S. Nithin C, et al. Among authors: kmiecik s. Protein Sci. 2024 Sep;33(9):e5090. doi: 10.1002/pro.5090. Protein Sci. 2024. PMID: 39194135 Free PMC article. Review.

2

Denatured proteins and early folding intermediates simulated in a reduced conformational space.

Kmiecik S, Kurcinski M, Rutkowska A, Gront D, Kolinski A. Kmiecik S, et al. Acta Biochim Pol. 2006;53(1):131-44. Epub 2005 Dec 19. Acta Biochim Pol. 2006. PMID: 16365636

3

Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates.

Gront D, Kmiecik S, Kolinski A. Gront D, et al. Among authors: kmiecik s. J Comput Chem. 2007 Jul 15;28(9):1593-1597. doi: 10.1002/jcc.20624. J Comput Chem. 2007. PMID: 17342707

4

Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field.

Kmiecik S, Gront D, Kolinski A. Kmiecik S, et al. BMC Struct Biol. 2007 Jun 29;7:43. doi: 10.1186/1472-6807-7-43. BMC Struct Biol. 2007. PMID: 17603876 Free PMC article.

5

Characterization of protein-folding pathways by reduced-space modeling.

Kmiecik S, Kolinski A. Kmiecik S, et al. Proc Natl Acad Sci U S A. 2007 Jul 24;104(30):12330-5. doi: 10.1073/pnas.0702265104. Epub 2007 Jul 16. Proc Natl Acad Sci U S A. 2007. PMID: 17636132 Free PMC article.

6

Folding pathway of the b1 domain of protein G explored by multiscale modeling.

Kmiecik S, Kolinski A. Kmiecik S, et al. Biophys J. 2008 Feb 1;94(3):726-36. doi: 10.1529/biophysj.107.116095. Epub 2007 Sep 21. Biophys J. 2008. PMID: 17890394 Free PMC article.

7

Simulation of chaperonin effect on protein folding: a shift from nucleation-condensation to framework mechanism.

Kmiecik S, Kolinski A. Kmiecik S, et al. J Am Chem Soc. 2011 Jul 6;133(26):10283-9. doi: 10.1021/ja203275f. Epub 2011 Jun 10. J Am Chem Soc. 2011. PMID: 21618995 Free PMC article.

8

From coarse-grained to atomic-level characterization of protein dynamics: transition state for the folding of B domain of protein A.

Kmiecik S, Gront D, Kouza M, Kolinski A. Kmiecik S, et al. J Phys Chem B. 2012 Jun 14;116(23):7026-32. doi: 10.1021/jp301720w. Epub 2012 Apr 19. J Phys Chem B. 2012. PMID: 22486297

9

CABS-flex: Server for fast simulation of protein structure fluctuations.

Jamroz M, Kolinski A, Kmiecik S. Jamroz M, et al. Among authors: kmiecik s. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W427-31. doi: 10.1093/nar/gkt332. Epub 2013 May 8. Nucleic Acids Res. 2013. PMID: 23658222 Free PMC article.

10

Combining coarse-grained protein models with replica-exchange all-atom molecular dynamics.

Wabik J, Kmiecik S, Gront D, Kouza M, Koliński A. Wabik J, et al. Among authors: kmiecik s. Int J Mol Sci. 2013 May 10;14(5):9893-905. doi: 10.3390/ijms14059893. Int J Mol Sci. 2013. PMID: 23665897 Free PMC article.

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