Kolinski A - Search Results

1

Exploring protein functions from structural flexibility using CABS-flex modeling.

Nithin C, Fornari RP, Pilla SP, Wroblewski K, Zalewski M, Madaj R, Kolinski A, Macnar JM, Kmiecik S. Nithin C, et al. Among authors: kolinski a. Protein Sci. 2024 Sep;33(9):e5090. doi: 10.1002/pro.5090. Protein Sci. 2024. PMID: 39194135 Free PMC article. Review.

2

Characterization of protein-folding pathways by reduced-space modeling.

Kmiecik S, Kolinski A. Kmiecik S, et al. Among authors: kolinski a. Proc Natl Acad Sci U S A. 2007 Jul 24;104(30):12330-5. doi: 10.1073/pnas.0702265104. Epub 2007 Jul 16. Proc Natl Acad Sci U S A. 2007. PMID: 17636132 Free PMC article.

3

CABS-flex: Server for fast simulation of protein structure fluctuations.

Jamroz M, Kolinski A, Kmiecik S. Jamroz M, et al. Among authors: kolinski a. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W427-31. doi: 10.1093/nar/gkt332. Epub 2013 May 8. Nucleic Acids Res. 2013. PMID: 23658222 Free PMC article.

4

Protocols for efficient simulations of long-time protein dynamics using coarse-grained CABS model.

Jamroz M, Kolinski A, Kmiecik S. Jamroz M, et al. Among authors: kolinski a. Methods Mol Biol. 2014;1137:235-50. doi: 10.1007/978-1-4939-0366-5_16. Methods Mol Biol. 2014. PMID: 24573485

5

CABS-flex predictions of protein flexibility compared with NMR ensembles.

Jamroz M, Kolinski A, Kmiecik S. Jamroz M, et al. Among authors: kolinski a. Bioinformatics. 2014 Aug 1;30(15):2150-4. doi: 10.1093/bioinformatics/btu184. Epub 2014 Apr 15. Bioinformatics. 2014. PMID: 24735558 Free PMC article.

6

One-Dimensional Structural Properties of Proteins in the Coarse-Grained CABS Model.

Kmiecik S, Kolinski A. Kmiecik S, et al. Among authors: kolinski a. Methods Mol Biol. 2017;1484:83-113. doi: 10.1007/978-1-4939-6406-2_8. Methods Mol Biol. 2017. PMID: 27787822

7

CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures.

Kuriata A, Gierut AM, Oleniecki T, Ciemny MP, Kolinski A, Kurcinski M, Kmiecik S. Kuriata A, et al. Among authors: kolinski a. Nucleic Acids Res. 2018 Jul 2;46(W1):W338-W343. doi: 10.1093/nar/gky356. Nucleic Acids Res. 2018. PMID: 29762700 Free PMC article.

8

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility.

Kurcinski M, Oleniecki T, Ciemny MP, Kuriata A, Kolinski A, Kmiecik S. Kurcinski M, et al. Among authors: kolinski a. Bioinformatics. 2019 Feb 15;35(4):694-695. doi: 10.1093/bioinformatics/bty685. Bioinformatics. 2019. PMID: 30101282 Free PMC article.

9

Modeling of Protein Structural Flexibility and Large-Scale Dynamics: Coarse-Grained Simulations and Elastic Network Models.

Kmiecik S, Kouza M, Badaczewska-Dawid AE, Kloczkowski A, Kolinski A. Kmiecik S, et al. Among authors: kolinski a. Int J Mol Sci. 2018 Nov 6;19(11):3496. doi: 10.3390/ijms19113496. Int J Mol Sci. 2018. PMID: 30404229 Free PMC article. Review.

10

Flexible docking of peptides to proteins using CABS-dock.

Kurcinski M, Badaczewska-Dawid A, Kolinski M, Kolinski A, Kmiecik S. Kurcinski M, et al. Among authors: kolinski a. Protein Sci. 2020 Jan;29(1):211-222. doi: 10.1002/pro.3771. Epub 2019 Nov 11. Protein Sci. 2020. PMID: 31682301 Free PMC article.

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