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Deep Learning Methods for De Novo Peptide Sequencing.
Bittremieux W, Ananth V, Fondrie WE, Melendez C, Pominova M, Sanders J, Wen B, Yilmaz M, Noble WS. Bittremieux W, et al. Among authors: fondrie we. Mass Spectrom Rev. 2024 Nov 29. doi: 10.1002/mas.21919. Online ahead of print. Mass Spectrom Rev. 2024. PMID: 39611290 Review.
Accounting for Digestion Enzyme Bias in Casanovo.
Melendez C, Sanders J, Yilmaz M, Bittremieux W, Fondrie WE, Oh S, Noble WS. Melendez C, et al. Among authors: fondrie we. J Proteome Res. 2024 Oct 4;23(10):4761-4769. doi: 10.1021/acs.jproteome.4c00422. Epub 2024 Aug 30. J Proteome Res. 2024. PMID: 39213590
Target-decoy false discovery rate estimation using Crema.
Lin A, See D, Fondrie WE, Keich U, Noble WS. Lin A, et al. Among authors: fondrie we. Proteomics. 2024 Apr;24(8):e2300084. doi: 10.1002/pmic.202300084. Epub 2024 Feb 21. Proteomics. 2024. PMID: 38380501
Evaluating Proteomics Imputation Methods with Improved Criteria.
Harris L, Fondrie WE, Oh S, Noble WS. Harris L, et al. Among authors: fondrie we. J Proteome Res. 2023 Nov 3;22(11):3427-3438. doi: 10.1021/acs.jproteome.3c00205. Epub 2023 Oct 20. J Proteome Res. 2023. PMID: 37861703 Free PMC article.
The Crux Toolkit for Analysis of Bottom-Up Tandem Mass Spectrometry Proteomics Data.
Kertesz-Farkas A, Nii Adoquaye Acquaye FL, Bhimani K, Eng JK, Fondrie WE, Grant C, Hoopmann MR, Lin A, Lu YY, Moritz RL, MacCoss MJ, Noble WS. Kertesz-Farkas A, et al. Among authors: fondrie we. J Proteome Res. 2023 Feb 3;22(2):561-569. doi: 10.1021/acs.jproteome.2c00615. Epub 2023 Jan 4. J Proteome Res. 2023. PMID: 36598107 Free PMC article.
22 results