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Page 1
Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota.
Oliver T, Varghese N, Roux S, Schulz F, Huntemann M, Clum A, Foster B, Foster B, Riley R, LaButti K, Egan R, Hajek P, Mukherjee S, Ovchinnikova G, Reddy TBK, Calhoun S, Hayes RD, Rohwer RR, Zhou Z, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Mouncey NJ, Del Rio TG, Grigoriev IV, Hofmeyr S, Oliker L, Yelick K, Anantharaman K, McMahon KD, Woyke T, Eloe-Fadrosh EA. Oliver T, et al. Among authors: hayes rd. Sci Data. 2024 Sep 4;11(1):966. doi: 10.1038/s41597-024-03826-8. Sci Data. 2024. PMID: 39231974 Free PMC article.
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.
Miyauchi S, Kiss E, Kuo A, Drula E, Kohler A, Sánchez-García M, Morin E, Andreopoulos B, Barry KW, Bonito G, Buée M, Carver A, Chen C, Cichocki N, Clum A, Culley D, Crous PW, Fauchery L, Girlanda M, Hayes RD, Kéri Z, LaButti K, Lipzen A, Lombard V, Magnuson J, Maillard F, Murat C, Nolan M, Ohm RA, Pangilinan J, Pereira MF, Perotto S, Peter M, Pfister S, Riley R, Sitrit Y, Stielow JB, Szöllősi G, Žifčáková L, Štursová M, Spatafora JW, Tedersoo L, Vaario LM, Yamada A, Yan M, Wang P, Xu J, Bruns T, Baldrian P, Vilgalys R, Dunand C, Henrissat B, Grigoriev IV, Hibbett D, Nagy LG, Martin FM. Miyauchi S, et al. Among authors: hayes rd. Nat Commun. 2020 Oct 12;11(1):5125. doi: 10.1038/s41467-020-18795-w. Nat Commun. 2020. PMID: 33046698 Free PMC article.
PhycoCosm, a comparative algal genomics resource.
Grigoriev IV, Hayes RD, Calhoun S, Kamel B, Wang A, Ahrendt S, Dusheyko S, Nikitin R, Mondo SJ, Salamov A, Shabalov I, Kuo A. Grigoriev IV, et al. Among authors: hayes rd. Nucleic Acids Res. 2021 Jan 8;49(D1):D1004-D1011. doi: 10.1093/nar/gkaa898. Nucleic Acids Res. 2021. PMID: 33104790 Free PMC article.
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM. Franco MEE, et al. Among authors: hayes rd. New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873. Epub 2021 Dec 7. New Phytol. 2022. PMID: 34797921 Free article.
Conservation and Expansion of Transcriptional Factor Repertoire in the Fusarium oxysporum Species Complex.
Yu H, Yang H, Haridas S, Hayes RD, Lynch H, Andersen S, Li G, Martínez-Soto D, Milo-Cochavi S, Ayhan DH, Zhang Y, Grigoriev IV, Ma LJ. Yu H, et al. Among authors: hayes rd. bioRxiv [Preprint]. 2023 Feb 10:2023.02.09.527873. doi: 10.1101/2023.02.09.527873. bioRxiv. 2023. Update in: J Fungi (Basel). 2023 Mar 15;9(3):359. doi: 10.3390/jof9030359 PMID: 36798233 Free PMC article. Updated. Preprint.
IMA genome-F18 : The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1.
Visagie CM, Magistà D, Ferrara M, Balocchi F, Duong TA, Eichmeier A, Gramaje D, Aylward J, Baker SE, Barnes I, Calhoun S, De Angelis M, Frisvad JC, Hakalova E, Hayes RD, Houbraken J, Grigoriev IV, LaButti K, Leal C, Lipzen A, Ng V, Pangilinan J, Pecenka J, Perrone G, Piso A, Savage E, Spetik M, Wingfield MJ, Zhang Y, Wingfield BD. Visagie CM, et al. Among authors: hayes rd. IMA Fungus. 2023 Oct 6;14(1):21. doi: 10.1186/s43008-023-00121-w. IMA Fungus. 2023. PMID: 37803441 Free PMC article. No abstract available.
Genomes of multicellular algal sisters to land plants illuminate signaling network evolution.
Feng X, Zheng J, Irisarri I, Yu H, Zheng B, Ali Z, de Vries S, Keller J, Fürst-Jansen JMR, Dadras A, Zegers JMS, Rieseberg TP, Dhabalia Ashok A, Darienko T, Bierenbroodspot MJ, Gramzow L, Petroll R, Haas FB, Fernandez-Pozo N, Nousias O, Li T, Fitzek E, Grayburn WS, Rittmeier N, Permann C, Rümpler F, Archibald JM, Theißen G, Mower JP, Lorenz M, Buschmann H, von Schwartzenberg K, Boston L, Hayes RD, Daum C, Barry K, Grigoriev IV, Wang X, Li FW, Rensing SA, Ben Ari J, Keren N, Mosquna A, Holzinger A, Delaux PM, Zhang C, Huang J, Mutwil M, de Vries J, Yin Y. Feng X, et al. Among authors: hayes rd. Nat Genet. 2024 May;56(5):1018-1031. doi: 10.1038/s41588-024-01737-3. Epub 2024 May 1. Nat Genet. 2024. PMID: 38693345 Free PMC article.
113 results