Liu L - Search Results

1

Short branch attraction in phylogenomic inference under the multispecies coalescent.

Liu L, Yu L, Wu S, Arnold J, Whalen C, Davis C, Edwards S. Liu L, et al. Front Ecol Evol. 2023;11:1134764. doi: 10.3389/fevo.2023.1134764. Epub 2023 Jun 28. Front Ecol Evol. 2023. PMID: 39233780 Free PMC article.

2

Coalescent methods for estimating phylogenetic trees.

Liu L, Yu L, Kubatko L, Pearl DK, Edwards SV. Liu L, et al. Mol Phylogenet Evol. 2009 Oct;53(1):320-8. doi: 10.1016/j.ympev.2009.05.033. Epub 2009 Jun 6. Mol Phylogenet Evol. 2009. PMID: 19501178 Review.

3

Coalescent methods are robust to the simultaneous effects of long branches and incomplete lineage sorting.

Liu L, Xi Z, Davis CC. Liu L, et al. Mol Biol Evol. 2015 Mar;32(3):791-805. doi: 10.1093/molbev/msu331. Epub 2014 Nov 26. Mol Biol Evol. 2015. PMID: 25431481

4

Estimating phylogenetic trees from genome-scale data.

Liu L, Xi Z, Wu S, Davis CC, Edwards SV. Liu L, et al. Ann N Y Acad Sci. 2015 Dec;1360:36-53. doi: 10.1111/nyas.12747. Epub 2015 Apr 14. Ann N Y Acad Sci. 2015. PMID: 25873435 Review.

5

Genes with minimal phylogenetic information are problematic for coalescent analyses when gene tree estimation is biased.

Xi Z, Liu L, Davis CC. Xi Z, et al. Among authors: liu l. Mol Phylogenet Evol. 2015 Nov;92:63-71. doi: 10.1016/j.ympev.2015.06.009. Epub 2015 Jun 24. Mol Phylogenet Evol. 2015. PMID: 26115844

6

Comment on "Statistical binning enables an accurate coalescent-based estimation of the avian tree".

Liu L, Edwards SV. Liu L, et al. Science. 2015 Oct 9;350(6257):171. doi: 10.1126/science.aaa7343. Science. 2015. PMID: 26450203

7

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics.

Edwards SV, Xi Z, Janke A, Faircloth BC, McCormack JE, Glenn TC, Zhong B, Wu S, Lemmon EM, Lemmon AR, Leaché AD, Liu L, Davis CC. Edwards SV, et al. Among authors: liu l. Mol Phylogenet Evol. 2016 Jan;94(Pt A):447-62. doi: 10.1016/j.ympev.2015.10.027. Epub 2015 Oct 27. Mol Phylogenet Evol. 2016. PMID: 26518740 Free article. Review.

8

The Impact of Missing Data on Species Tree Estimation.

Xi Z, Liu L, Davis CC. Xi Z, et al. Among authors: liu l. Mol Biol Evol. 2016 Mar;33(3):838-60. doi: 10.1093/molbev/msv266. Epub 2015 Nov 20. Mol Biol Evol. 2016. PMID: 26589995

9

Genome-scale DNA sequence data and the evolutionary history of placental mammals.

Wu S, Edwards S, Liu L. Wu S, et al. Among authors: liu l. Data Brief. 2018 May 1;18:1972-1975. doi: 10.1016/j.dib.2018.04.094. eCollection 2018 Jun. Data Brief. 2018. PMID: 29904704 Free PMC article.

10

Modern Phylogenomics: Building Phylogenetic Trees Using the Multispecies Coalescent Model.

Liu L, Anderson C, Pearl D, Edwards SV. Liu L, et al. Methods Mol Biol. 2019;1910:211-239. doi: 10.1007/978-1-4939-9074-0_7. Methods Mol Biol. 2019. PMID: 31278666

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