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RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome.
Li Q, Gent JI, Zynda G, Song J, Makarevitch I, Hirsch CD, Hirsch CN, Dawe RK, Madzima TF, McGinnis KM, Lisch D, Schmitz RJ, Vaughn MW, Springer NM. Li Q, et al. Among authors: hirsch cd, hirsch cn. Proc Natl Acad Sci U S A. 2015 Nov 24;112(47):14728-33. doi: 10.1073/pnas.1514680112. Epub 2015 Nov 9. Proc Natl Acad Sci U S A. 2015. PMID: 26553984 Free PMC article.
Transposable elements contribute to dynamic genome content in maize.
Anderson SN, Stitzer MC, Brohammer AB, Zhou P, Noshay JM, O'Connor CH, Hirsch CD, Ross-Ibarra J, Hirsch CN, Springer NM. Anderson SN, et al. Among authors: hirsch cd, hirsch cn. Plant J. 2019 Dec;100(5):1052-1065. doi: 10.1111/tpj.14489. Epub 2019 Sep 18. Plant J. 2019. PMID: 31381222 Free article.
Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
Ou S, Liu J, Chougule KM, Fungtammasan A, Seetharam AS, Stein JC, Llaca V, Manchanda N, Gilbert AM, Wei S, Chin CS, Hufnagel DE, Pedersen S, Snodgrass SJ, Fengler K, Woodhouse M, Walenz BP, Koren S, Phillippy AM, Hannigan BT, Dawe RK, Hirsch CN, Hufford MB, Ware D. Ou S, et al. Among authors: hirsch cn. Nat Commun. 2020 May 8;11(1):2288. doi: 10.1038/s41467-020-16037-7. Nat Commun. 2020. PMID: 32385271 Free PMC article.
Gapless assembly of maize chromosomes using long-read technologies.
Liu J, Seetharam AS, Chougule K, Ou S, Swentowsky KW, Gent JI, Llaca V, Woodhouse MR, Manchanda N, Presting GG, Kudrna DA, Alabady M, Hirsch CN, Fengler KA, Ware D, Michael TP, Hufford MB, Dawe RK. Liu J, et al. Among authors: hirsch cn. Genome Biol. 2020 May 20;21(1):121. doi: 10.1186/s13059-020-02029-9. Genome Biol. 2020. PMID: 32434565 Free PMC article.
How the pan-genome is changing crop genomics and improvement.
Della Coletta R, Qiu Y, Ou S, Hufford MB, Hirsch CN. Della Coletta R, et al. Among authors: hirsch cn. Genome Biol. 2021 Jan 4;22(1):3. doi: 10.1186/s13059-020-02224-8. Genome Biol. 2021. PMID: 33397434 Free PMC article. Review.
Genetic control of kernel compositional variation in a maize diversity panel.
Renk JS, Gilbert AM, Hattery TJ, O'Connor CH, Monnahan PJ, Anderson N, Waters AJ, Eickholt DP, Flint-Garcia SA, Yandeau-Nelson MD, Hirsch CN. Renk JS, et al. Among authors: hirsch cn. Plant Genome. 2021 Nov;14(3):e20115. doi: 10.1002/tpg2.20115. Epub 2021 Jul 1. Plant Genome. 2021. PMID: 34197039 Free article.
76 results