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Efficient epistasis inference via higher-order covariance matrix factorization.
bioRxiv [Preprint]. 2024 Oct 14:2024.10.14.618287. doi: 10.1101/2024.10.14.618287.
bioRxiv. 2024.
PMID: 39464126
Free PMC article.
Preprint.
popDMS infers mutation effects from deep mutational scanning data.
Hong Z, Shimagaki KS, Barton JP.
Hong Z, et al. Among authors: shimagaki ks.
Bioinformatics. 2024 Aug 2;40(8):btae499. doi: 10.1093/bioinformatics/btae499.
Bioinformatics. 2024.
PMID: 39115383
Free PMC article.
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Parallel HIV-1 fitness landscapes shape viral dynamics in humans and macaques that develop broadly neutralizing antibodies.
Shimagaki KS, Lynch RM, Barton JP.
Shimagaki KS, et al.
bioRxiv [Preprint]. 2024 Dec 7:2024.07.12.603090. doi: 10.1101/2024.07.12.603090.
bioRxiv. 2024.
PMID: 39071321
Free PMC article.
Preprint.
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