Brandt N - Search Results

1

Template switching during DNA replication is a prevalent source of adaptive gene amplification.

Chuong JN, Nun NB, Suresh I, Matthews JC, De T, Avecilla G, Abdul-Rahman F, Brandt N, Ram Y, Gresham D. Chuong JN, et al. Among authors: brandt n. bioRxiv [Preprint]. 2024 Oct 15:2024.05.03.589936. doi: 10.1101/2024.05.03.589936. bioRxiv. 2024. PMID: 39464144 Free PMC article. Preprint.

2

An incoherent feedforward loop facilitates adaptive tuning of gene expression.

Hong J, Brandt N, Abdul-Rahman F, Yang A, Hughes T, Gresham D. Hong J, et al. Among authors: brandt n. Elife. 2018 Apr 5;7:e32323. doi: 10.7554/eLife.32323. Elife. 2018. PMID: 29620523 Free PMC article.

3

Single-cell copy number variant detection reveals the dynamics and diversity of adaptation.

Lauer S, Avecilla G, Spealman P, Sethia G, Brandt N, Levy SF, Gresham D. Lauer S, et al. Among authors: brandt n. PLoS Biol. 2018 Dec 18;16(12):e3000069. doi: 10.1371/journal.pbio.3000069. eCollection 2018 Dec. PLoS Biol. 2018. PMID: 30562346 Free PMC article.

4

Steady-state and dynamic gene expression programs in Saccharomyces cerevisiae in response to variation in environmental nitrogen.

Airoldi EM, Miller D, Athanasiadou R, Brandt N, Abdul-Rahman F, Neymotin B, Hashimoto T, Bahmani T, Gresham D. Airoldi EM, et al. Among authors: brandt n. Mol Biol Cell. 2016 Apr 15;27(8):1383-96. doi: 10.1091/mbc.E14-05-1013. Epub 2016 Mar 3. Mol Biol Cell. 2016. PMID: 26941329 Free PMC article.

5

The use of chemostats in microbial systems biology.

Ziv N, Brandt NJ, Gresham D. Ziv N, et al. Among authors: brandt nj. J Vis Exp. 2013 Oct 14;(80):50168. doi: 10.3791/50168. J Vis Exp. 2013. PMID: 24145466 Free PMC article.

6

Systematic identification of factors mediating accelerated mRNA degradation in response to changes in environmental nitrogen.

Miller D, Brandt N, Gresham D. Miller D, et al. Among authors: brandt n. PLoS Genet. 2018 May 21;14(5):e1007406. doi: 10.1371/journal.pgen.1007406. eCollection 2018 May. PLoS Genet. 2018. PMID: 29782489 Free PMC article.

7

Genetic interaction profiles of regulatory kinases differ between environmental conditions and cellular states.

Sun S, Baryshnikova A, Brandt N, Gresham D. Sun S, et al. Among authors: brandt n. Mol Syst Biol. 2020 May;16(5):e9167. doi: 10.15252/msb.20199167. Mol Syst Biol. 2020. PMID: 32449603 Free PMC article.

8

A complete statistical model for calibration of RNA-seq counts using external spike-ins and maximum likelihood theory.

Athanasiadou R, Neymotin B, Brandt N, Wang W, Christiaen L, Gresham D, Tranchina D. Athanasiadou R, et al. Among authors: brandt n. PLoS Comput Biol. 2019 Mar 11;15(3):e1006794. doi: 10.1371/journal.pcbi.1006794. eCollection 2019 Mar. PLoS Comput Biol. 2019. PMID: 30856174 Free PMC article.

9

System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae.

Gresham D, Boer VM, Caudy A, Ziv N, Brandt NJ, Storey JD, Botstein D. Gresham D, et al. Among authors: brandt nj. Genetics. 2011 Jan;187(1):299-317. doi: 10.1534/genetics.110.120766. Epub 2010 Oct 13. Genetics. 2011. PMID: 20944018 Free PMC article.

10

A Nursing Home Clinician Survey to Explain Gabapentinoid Increases.

Winter JD, Kerns JW, Qato DM, Winter KM, Brandt N, Wastila L, Winter C, Fu YH, Elonge E, Krist AH, Reves SR, Etz RS. Winter JD, et al. Among authors: brandt n. J Am Med Dir Assoc. 2024 Nov 17;26(1):105363. doi: 10.1016/j.jamda.2024.105363. Online ahead of print. J Am Med Dir Assoc. 2024. PMID: 39566572

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