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Complex portal 2025: predicted human complexes and enhanced visualisation tools for the comparison of orthologous and paralogous complexes.
Balu S, Huget S, Medina Reyes JJ, Ragueneau E, Panneerselvam K, Fischer SN, Claussen ER, Kourtis S, Combe CW, Meldal BHM, Perfetto L, Rappsilber J, Kustatscher G, Drew K, Orchard S, Hermjakob H. Balu S, et al. Among authors: hermjakob h. Nucleic Acids Res. 2024 Nov 18:gkae1085. doi: 10.1093/nar/gkae1085. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39558156
AI-readiness for Biomedical Data: Bridge2AI Recommendations.
Clark T, Caufield H, Parker JA, Manir SA, Amorim E, Eddy J, Gim N, Gow B, Goar W, Haendel M, Hansen JN, Harris N, Hermjakob H, Joachimiak M, Jordan G, Lee IH, McWeeney S, Nebeker C, Nikolov M, Shaffer J, Sheffield N, Sheynkman G, Stevenson J, Chen JY, Mungall C, Wagner A, Kong SW, Ghosh SS, Patel B, Williams A, Munoz-Torres MC. Clark T, et al. Among authors: hermjakob h. bioRxiv [Preprint]. 2024 Nov 7:2024.10.23.619844. doi: 10.1101/2024.10.23.619844. bioRxiv. 2024. PMID: 39484409 Free PMC article. Preprint.
ReactomeGSA: new features to simplify public data reuse.
Grentner A, Ragueneau E, Gong C, Prinz A, Gansberger S, Oyarzun I, Hermjakob H, Griss J. Grentner A, et al. Among authors: hermjakob h. Bioinformatics. 2024 Jun 3;40(6):btae338. doi: 10.1093/bioinformatics/btae338. Bioinformatics. 2024. PMID: 38806182 Free PMC article.
Perspectives on tracking data reuse across biodata resources.
Ross KE, Bastian FB, Buys M, Cook CE, D'Eustachio P, Harrison M, Hermjakob H, Li D, Lord P, Natale DA, Peters B, Sternberg PW, Su AI, Thakur M, Thomas PD, Bateman A; and the UniProt Consortium. Ross KE, et al. Among authors: hermjakob h. Bioinform Adv. 2024 Apr 25;4(1):vbae057. doi: 10.1093/bioadv/vbae057. eCollection 2024. Bioinform Adv. 2024. PMID: 38721398 Free PMC article.
Pathway-based, reaction-specific annotation of disease variants for elucidation of molecular phenotypes.
Orlic-Milacic M, Rothfels K, Matthews L, Wright A, Jassal B, Shamovsky V, Trinh Q, Gillespie ME, Sevilla C, Tiwari K, Ragueneau E, Gong C, Stephan R, May B, Haw R, Weiser J, Beavers D, Conley P, Hermjakob H, Stein LD, D'Eustachio P, Wu G. Orlic-Milacic M, et al. Among authors: hermjakob h. Database (Oxford). 2024 May 7;2024:baae031. doi: 10.1093/database/baae031. Database (Oxford). 2024. PMID: 38713862 Free PMC article.
ChatGPT usage in the Reactome curation process.
Tiwari K, Matthews L, May B, Shamovsky V, Orlic-Milacic M, Rothfels K, Ragueneau E, Gong C, Stephan R, Li N, Wu G, Stein L, D'Eustachio P, Hermjakob H. Tiwari K, et al. Among authors: hermjakob h. bioRxiv [Preprint]. 2023 Nov 8:2023.11.08.566195. doi: 10.1101/2023.11.08.566195. bioRxiv. 2023. PMID: 37986970 Free PMC article. Preprint.
293 results