Brinda K - Search Results

1

Rapid inference of antibiotic susceptibility phenotype of uropathogens using metagenomic sequencing with neighbor typing.

Carroll AC, Mortimer L, Ghosh H, Reuter S, Grundmann H, Brinda K, Hanage WP, Li A, Paterson A, Purssell A, Rooney A, Yee NR, Coburn B, Able-Thomas S, Antonio M, McGeer A, MacFadden DR. Carroll AC, et al. Among authors: brinda k. Microbiol Spectr. 2024 Nov 29:e0136624. doi: 10.1128/spectrum.01366-24. Online ahead of print. Microbiol Spectr. 2024. PMID: 39611823

2

Efficient and Robust Search of Microbial Genomes via Phylogenetic Compression.

Břinda K, Lima L, Pignotti S, Quinones-Olvera N, Salikhov K, Chikhi R, Kucherov G, Iqbal Z, Baym M. Břinda K, et al. bioRxiv [Preprint]. 2024 May 11:2023.04.15.536996. doi: 10.1101/2023.04.15.536996. bioRxiv. 2024. PMID: 37131636 Free PMC article. Preprint.

3

SARS-CoV-2 epidemic after social and economic reopening in three U.S. states reveals shifts in age structure and clinical characteristics.

Wikle NB, Tran TN, Gentilesco B, Leighow SM, Albert E, Strong ER, Brinda K, Inam H, Yang F, Hossain S, Chan P, Hanage WP, Messick M, Pritchard JR, Hanks EM, Boni MF. Wikle NB, et al. Among authors: brinda k. Sci Adv. 2022 Jan 28;8(4):eabf9868. doi: 10.1126/sciadv.abf9868. Epub 2022 Jan 26. Sci Adv. 2022. PMID: 35080987 Free PMC article.

4

High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria.

Che Y, Xu X, Yang Y, Břinda K, Hanage W, Yang C, Zhang T. Che Y, et al. Among authors: brinda k. Microbiome. 2022 Jan 25;10(1):16. doi: 10.1186/s40168-021-01192-w. Microbiome. 2022. PMID: 35078531 Free PMC article.

5

Reply to Partridge et al.: Complementary bioinformatics and experimental approaches to investigate the transfer of AMR genes.

Che Y, Yang Y, Xu X, Břinda K, Polz MF, Hanage WP, Zhang T. Che Y, et al. Among authors: brinda k. Proc Natl Acad Sci U S A. 2021 Aug 31;118(35):e2108995118. doi: 10.1073/pnas.2108995118. Proc Natl Acad Sci U S A. 2021. PMID: 34453008 Free PMC article. No abstract available.

6

SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics.

Wikle N, Tran TN, Gentilesco B, Leighow SM, Albert J, Strong ER, Břinda K, Inam H, Yang F, Hossain S, Chan P, Hanage WP, Messick M, Pritchard JR, Hanks EM, Boni MF. Wikle N, et al. Among authors: brinda k. medRxiv [Preprint]. 2021 Nov 6:2020.11.17.20232918. doi: 10.1101/2020.11.17.20232918. medRxiv. 2021. Update in: Sci Adv. 2022 Jan 28;8(4):eabf9868. doi: 10.1126/sciadv.abf9868 PMID: 34426816 Free PMC article. Updated. Preprint.

7

Optimal SARS-CoV-2 vaccine allocation using real-time attack-rate estimates in Rhode Island and Massachusetts.

Tran TN, Wikle NB, Albert E, Inam H, Strong E, Brinda K, Leighow SM, Yang F, Hossain S, Pritchard JR, Chan P, Hanage WP, Hanks EM, Boni MF. Tran TN, et al. Among authors: brinda k. BMC Med. 2021 Jul 13;19(1):162. doi: 10.1186/s12916-021-02038-w. BMC Med. 2021. PMID: 34253200 Free PMC article.

8

Reply to Shaw: Challenges for enrichment analysis of AMR gene-bearing plasmids.

Che Y, Yang Y, Xu X, Břinda K, Polz MF, Hanage WP, Zhang T. Che Y, et al. Among authors: brinda k. Proc Natl Acad Sci U S A. 2021 May 25;118(21):e2104557118. doi: 10.1073/pnas.2104557118. Proc Natl Acad Sci U S A. 2021. PMID: 33975908 Free PMC article. No abstract available.

9

Simplitigs as an efficient and scalable representation of de Bruijn graphs.

Břinda K, Baym M, Kucherov G. Břinda K, et al. Genome Biol. 2021 Apr 6;22(1):96. doi: 10.1186/s13059-021-02297-z. Genome Biol. 2021. PMID: 33823902 Free PMC article.

10

Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes.

Che Y, Yang Y, Xu X, Břinda K, Polz MF, Hanage WP, Zhang T. Che Y, et al. Among authors: brinda k. Proc Natl Acad Sci U S A. 2021 Feb 9;118(6):e2008731118. doi: 10.1073/pnas.2008731118. Proc Natl Acad Sci U S A. 2021. PMID: 33526659 Free PMC article.

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