Li Y - Search Results

1

Molecular dynamic simulations to explore the broad-spectrum activity of the inhibitor PF-07321332 against human coronavirus.

Liu MT, Wang YT, Li Y, Sang P, Yang LQ. Liu MT, et al. Among authors: li y. J Biomol Struct Dyn. 2024 Dec 1:1-14. doi: 10.1080/07391102.2024.2431661. Online ahead of print. J Biomol Struct Dyn. 2024. PMID: 39616543

2

Insight derived from molecular dynamics simulation into dynamics and molecular motions of cuticle-degrading serine protease Ver112.

Yang LQ, Chen GY, Li Y, Zhang RP, Liu SQ, Sang P. Yang LQ, et al. Among authors: li y. J Biomol Struct Dyn. 2019 May;37(8):2004-2016. doi: 10.1080/07391102.2018.1471418. Epub 2018 May 28. J Biomol Struct Dyn. 2019. PMID: 29718761

3

Comparative thermal unfolding study of psychrophilic and mesophilic subtilisin-like serine proteases by molecular dynamics simulations.

Du X, Sang P, Xia YL, Li Y, Liang J, Ai SM, Ji XL, Fu YX, Liu SQ. Du X, et al. Among authors: li y. J Biomol Struct Dyn. 2017 May;35(7):1500-1517. doi: 10.1080/07391102.2016.1188155. Epub 2016 Aug 2. J Biomol Struct Dyn. 2017. PMID: 27485684

4

Insight derived from molecular dynamics simulation into cold-adaptation mechanism of trypsins.

Yang LQ, Yin YR, Shen JX, Li Y, Liu SQ, Sang P. Yang LQ, et al. Among authors: li y. J Biomol Struct Dyn. 2020 Jun;38(9):2768-2776. doi: 10.1080/07391102.2019.1635529. Epub 2019 Jul 1. J Biomol Struct Dyn. 2020. PMID: 31232188

5

Deciphering gp120 sequence variation and structural dynamics in HIV neutralization phenotype by molecular dynamics simulations and graph machine learning.

Li Y, Guo YC, Cheng HH, Zeng X, Zhang XL, Sang P, Chen BH, Yang LQ. Li Y, et al. Proteins. 2022 Jul;90(7):1413-1424. doi: 10.1002/prot.26322. Epub 2022 Feb 28. Proteins. 2022. PMID: 35171521

6

Study on molecular mechanisms of CD4 dependency and independency of HIV-1 gp120.

Liu MT, Shen JX, Li XW, Yang L, Li Y, Sang P, Yang LQ. Liu MT, et al. Among authors: li xw, li y. RSC Adv. 2023 Feb 21;13(9):6274-6286. doi: 10.1039/d3ra00433c. eCollection 2023 Feb 14. RSC Adv. 2023. PMID: 36825290 Free PMC article.

7

Structural determinants underlying high-temperature adaptation of thermophilic xylanase from hot-spring microorganisms.

Li Y, Peng HQ, Yang LQ. Li Y, et al. Front Microbiol. 2023 Jul 7;14:1210420. doi: 10.3389/fmicb.2023.1210420. eCollection 2023. Front Microbiol. 2023. PMID: 37485531 Free PMC article.

8

Effects of CD4 Binding on Conformational Dynamics, Molecular Motions, and Thermodynamics of HIV-1 gp120.

Li Y, Deng L, Yang LQ, Sang P, Liu SQ. Li Y, et al. Int J Mol Sci. 2019 Jan 10;20(2):260. doi: 10.3390/ijms20020260. Int J Mol Sci. 2019. PMID: 30634692 Free PMC article.

9

CD4-binding obstacles in conformational transitions and allosteric communications of HIV gp120.

Li Y, Guo YC, Zhang XL, Deng L, Sang P, Yang LQ, Liu SQ. Li Y, et al. Biochim Biophys Acta Biomembr. 2020 Jun 1;1862(6):183217. doi: 10.1016/j.bbamem.2020.183217. Epub 2020 Feb 13. Biochim Biophys Acta Biomembr. 2020. PMID: 32061646 Free article.

10

Probing intrinsic dynamics and conformational transition of HIV gp120 by molecular dynamics simulation.

Li Y, Zhang XL, Yuan X, Hou JC, Sang P, Yang LQ. Li Y, et al. RSC Adv. 2020 Aug 18;10(51):30499-30507. doi: 10.1039/d0ra06416e. eCollection 2020 Aug 17. RSC Adv. 2020. PMID: 35516019 Free PMC article.

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