Stormo GD - Search Results

1

Finding common sequence and structure motifs in a set of RNA sequences.

Gorodkin J, Heyer LJ, Stormo GD. Gorodkin J, et al. Among authors: stormo gd. Proc Int Conf Intell Syst Mol Biol. 1997;5:120-3. Proc Int Conf Intell Syst Mol Biol. 1997. PMID: 9322025

2

Finding the most significant common sequence and structure motifs in a set of RNA sequences.

Gorodkin J, Heyer LJ, Stormo GD. Gorodkin J, et al. Among authors: stormo gd. Nucleic Acids Res. 1997 Sep 15;25(18):3724-32. doi: 10.1093/nar/25.18.3724. Nucleic Acids Res. 1997. PMID: 9278497 Free PMC article.

3

Displaying the information contents of structural RNA alignments: the structure logos.

Gorodkin J, Heyer LJ, Brunak S, Stormo GD. Gorodkin J, et al. Among authors: stormo gd. Comput Appl Biosci. 1997 Dec;13(6):583-6. doi: 10.1093/bioinformatics/13.6.583. Comput Appl Biosci. 1997. PMID: 9475985

4

Discovering common stem-loop motifs in unaligned RNA sequences.

Gorodkin J, Stricklin SL, Stormo GD. Gorodkin J, et al. Among authors: stormo gd. Nucleic Acids Res. 2001 May 15;29(10):2135-44. doi: 10.1093/nar/29.10.2135. Nucleic Acids Res. 2001. PMID: 11353083 Free PMC article.

5

A mini-greedy algorithm for faster structural RNA stem-loop search.

Gorodkin J, Lyngso RB, Stormo GD. Gorodkin J, et al. Among authors: stormo gd. Genome Inform. 2001;12:184-93. Genome Inform. 2001. PMID: 11791237

6

Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.

Havgaard JH, Lyngsø RB, Stormo GD, Gorodkin J. Havgaard JH, et al. Among authors: stormo gd. Bioinformatics. 2005 May 1;21(9):1815-24. doi: 10.1093/bioinformatics/bti279. Epub 2005 Jan 18. Bioinformatics. 2005. PMID: 15657094

7

Automated alignment of RNA sequences to pseudoknotted structures.

Tabaska JE, Stormo GD. Tabaska JE, et al. Among authors: stormo gd. Proc Int Conf Intell Syst Mol Biol. 1997;5:311-8. Proc Int Conf Intell Syst Mol Biol. 1997. PMID: 9322055

8

A phylogenetic approach to RNA structure prediction.

Akmaev VR, Kelley ST, Stormo GD. Akmaev VR, et al. Among authors: stormo gd. Proc Int Conf Intell Syst Mol Biol. 1999:10-7. Proc Int Conf Intell Syst Mol Biol. 1999. PMID: 10786281

9

Graph-theoretic approach to RNA modeling using comparative data.

Cary RB, Stormo GD. Cary RB, et al. Among authors: stormo gd. Proc Int Conf Intell Syst Mol Biol. 1995;3:75-80. Proc Int Conf Intell Syst Mol Biol. 1995. PMID: 7584469

10

A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences.

Ji Y, Xu X, Stormo GD. Ji Y, et al. Among authors: stormo gd. Bioinformatics. 2004 Jul 10;20(10):1591-602. doi: 10.1093/bioinformatics/bth131. Epub 2004 Feb 12. Bioinformatics. 2004. PMID: 14962926

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