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Page 1
Homology modeling with internal coordinate mechanics: deformation zone mapping and improvements of models via conformational search.
Abagyan R, Batalov S, Cardozo T, Totrov M, Webber J, Zhou Y. Abagyan R, et al. Proteins. 1997;Suppl 1:29-37. doi: 10.1002/(sici)1097-0134(1997)1+<29::aid-prot5>3.3.co;2-4. Proteins. 1997. PMID: 9485492
For all five low identity targets: (i) our starting models were improved by the Internal Coordinate Mechanics (ICM) energy optimization, (ii) the refined models were consistently better than those built with the automatic SWISS-MODEL program, and (iii) the refined models differed …
For all five low identity targets: (i) our starting models were improved by the Internal Coordinate Mechanics (ICM) energy optimization, (ii …
Molecular docking programs successfully predict the binding of a beta-lactamase inhibitory protein to TEM-1 beta-lactamase.
Strynadka NC, Eisenstein M, Katchalski-Katzir E, Shoichet BK, Kuntz ID, Abagyan R, Totrov M, Janin J, Cherfils J, Zimmerman F, Olson A, Duncan B, Rao M, Jackson R, Sternberg M, James MN. Strynadka NC, et al. Among authors: abagyan r. Nat Struct Biol. 1996 Mar;3(3):233-9. doi: 10.1038/nsb0396-233. Nat Struct Biol. 1996. PMID: 8605624
Homology modeling by the ICM method.
Cardozo T, Totrov M, Abagyan R. Cardozo T, et al. Among authors: abagyan r. Proteins. 1995 Nov;23(3):403-14. doi: 10.1002/prot.340230314. Proteins. 1995. PMID: 8710833
Long pentraxins: an emerging group of proteins with diverse functions.
Goodman AR, Cardozo T, Abagyan R, Altmeyer A, Wisniewski HG, Vilcek J. Goodman AR, et al. Among authors: abagyan r. Cytokine Growth Factor Rev. 1996 Aug;7(2):191-202. doi: 10.1016/1359-6101(96)00019-6. Cytokine Growth Factor Rev. 1996. PMID: 8899296 Review.
A new method for modeling large-scale rearrangements of protein domains.
Maiorov V, Abagyan R. Maiorov V, et al. Among authors: abagyan r. Proteins. 1997 Mar;27(3):410-24. doi: 10.1002/(sici)1097-0134(199703)27:3<410::aid-prot9>3.0.co;2-g. Proteins. 1997. PMID: 9094743
Large-scale sampling of the reduced torsions conformational subspace is effected with the "biased probability Monte Carlo-minimization" method [Abagyan, R.A., Totrov, M.M. (1994): J. Mol. Biol. 235, 983-1002]. Solvation and side-chain entropic contributions are adde …
Large-scale sampling of the reduced torsions conformational subspace is effected with the "biased probability Monte Carlo-minimization" meth …
347 results