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Machine learning and its applications to biology.
Tarca AL, Carey VJ, Chen XW, Romero R, Drăghici S. Tarca AL, et al. PLoS Comput Biol. 2007 Jun;3(6):e116. doi: 10.1371/journal.pcbi.0030116. PLoS Comput Biol. 2007. PMID: 17604446 Free PMC article. Review. No abstract available.
New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate.
Khatri P, Desai V, Tarca AL, Sellamuthu S, Wildman DE, Romero R, Draghici S. Khatri P, et al. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W626-31. doi: 10.1093/nar/gkl213. Nucleic Acids Res. 2006. PMID: 16845086 Free PMC article.
Onto-Tools: new additions and improvements in 2006.
Khatri P, Voichita C, Kattan K, Ansari N, Khatri A, Georgescu C, Tarca AL, Draghici S. Khatri P, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W206-11. doi: 10.1093/nar/gkm327. Epub 2007 Jun 21. Nucleic Acids Res. 2007. PMID: 17584796 Free PMC article.
A systems biology approach for pathway level analysis.
Draghici S, Khatri P, Tarca AL, Amin K, Done A, Voichita C, Georgescu C, Romero R. Draghici S, et al. Genome Res. 2007 Oct;17(10):1537-45. doi: 10.1101/gr.6202607. Epub 2007 Sep 4. Genome Res. 2007. PMID: 17785539 Free PMC article.