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Protein functional annotation by homology.
Mazumder R, Vasudevan S, Nikolskaya AN. Mazumder R, et al. Methods Mol Biol. 2008;484:465-90. doi: 10.1007/978-1-59745-398-1_28. Methods Mol Biol. 2008. PMID: 18592196
Animal Toxins: How is Complexity Represented in Databases?
Jungo F, Estreicher A, Bairoch A, Bougueleret L, Xenarios I. Jungo F, et al. Toxins (Basel). 2010 Feb;2(2):262-82. doi: 10.3390/toxins2020262. Epub 2010 Feb 21. Toxins (Basel). 2010. PMID: 22069583 Free PMC article.
Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi.
Burmester A, Shelest E, Glöckner G, Heddergott C, Schindler S, Staib P, Heidel A, Felder M, Petzold A, Szafranski K, Feuermann M, Pedruzzi I, Priebe S, Groth M, Winkler R, Li W, Kniemeyer O, Schroeckh V, Hertweck C, Hube B, White TC, Platzer M, Guthke R, Heitman J, Wöstemeyer J, Zipfel PF, Monod M, Brakhage AA. Burmester A, et al. Genome Biol. 2011;12(1):R7. doi: 10.1186/gb-2011-12-1-r7. Epub 2011 Jan 19. Genome Biol. 2011. PMID: 21247460 Free PMC article.
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot.
Lima T, Auchincloss AH, Coudert E, Keller G, Michoud K, Rivoire C, Bulliard V, de Castro E, Lachaize C, Baratin D, Phan I, Bougueleret L, Bairoch A. Lima T, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D471-8. doi: 10.1093/nar/gkn661. Epub 2008 Oct 11. Nucleic Acids Res. 2009. PMID: 18849571 Free PMC article.
UniProtJAPI: a remote API for accessing UniProt data.
Patient S, Wieser D, Kleen M, Kretschmann E, Jesus Martin M, Apweiler R. Patient S, et al. Bioinformatics. 2008 May 15;24(10):1321-2. doi: 10.1093/bioinformatics/btn122. Epub 2008 Apr 4. Bioinformatics. 2008. PMID: 18390879