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Update on LIPID MAPS classification, nomenclature, and shorthand notation for MS-derived lipid structures.
Liebisch G, Fahy E, Aoki J, Dennis EA, Durand T, Ejsing CS, Fedorova M, Feussner I, Griffiths WJ, Köfeler H, Merrill AH Jr, Murphy RC, O'Donnell VB, Oskolkova O, Subramaniam S, Wakelam MJO, Spener F. Liebisch G, et al. J Lipid Res. 2020 Dec;61(12):1539-1555. doi: 10.1194/jlr.S120001025. Epub 2020 Oct 9. J Lipid Res. 2020. PMID: 33037133 Free PMC article. Review.
The Biosynthesis of Enzymatically Oxidized Lipids.
Hajeyah AA, Griffiths WJ, Wang Y, Finch AJ, O'Donnell VB. Hajeyah AA, et al. Front Endocrinol (Lausanne). 2020 Nov 19;11:591819. doi: 10.3389/fendo.2020.591819. eCollection 2020. Front Endocrinol (Lausanne). 2020. PMID: 33329396 Free PMC article. Review.
Guiding the choice of informatics software and tools for lipidomics research applications.
Ni Z, Wölk M, Jukes G, Mendivelso Espinosa K, Ahrends R, Aimo L, Alvarez-Jarreta J, Andrews S, Andrews R, Bridge A, Clair GC, Conroy MJ, Fahy E, Gaud C, Goracci L, Hartler J, Hoffmann N, Kopczyinki D, Korf A, Lopez-Clavijo AF, Malik A, Ackerman JM, Molenaar MR, O'Donovan C, Pluskal T, Shevchenko A, Slenter D, Siuzdak G, Kutmon M, Tsugawa H, Willighagen EL, Xia J, O'Donnell VB, Fedorova M. Ni Z, et al. Nat Methods. 2023 Feb;20(2):193-204. doi: 10.1038/s41592-022-01710-0. Epub 2022 Dec 21. Nat Methods. 2023. PMID: 36543939 Free PMC article. Review.
LipidFinder 2.0: advanced informatics pipeline for lipidomics discovery applications.
Alvarez-Jarreta J, Rodrigues PRS, Fahy E, O'Connor A, Price A, Gaud C, Andrews S, Benton P, Siuzdak G, Hawksworth JI, Valdivia-Garcia M, Allen SM, O'Donnell VB. Alvarez-Jarreta J, et al. Bioinformatics. 2021 Jun 16;37(10):1478-1479. doi: 10.1093/bioinformatics/btaa856. Bioinformatics. 2021. PMID: 33027502 Free PMC article.
LIPID MAPS: update to databases and tools for the lipidomics community.
Conroy MJ, Andrews RM, Andrews S, Cockayne L, Dennis EA, Fahy E, Gaud C, Griffiths WJ, Jukes G, Kolchin M, Mendivelso K, Lopez-Clavijo AF, Ready C, Subramaniam S, O'Donnell VB. Conroy MJ, et al. Nucleic Acids Res. 2024 Jan 5;52(D1):D1677-D1682. doi: 10.1093/nar/gkad896. Nucleic Acids Res. 2024. PMID: 37855672 Free PMC article.
Lipidomics: Current state of the art in a fast moving field.
O'Donnell VB, Ekroos K, Liebisch G, Wakelam M. O'Donnell VB, et al. Wiley Interdiscip Rev Syst Biol Med. 2020 Jan;12(1):e1466. doi: 10.1002/wsbm.1466. Epub 2019 Oct 23. Wiley Interdiscip Rev Syst Biol Med. 2020. PMID: 31646749 Review.
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