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QIIME allows analysis of high-throughput community sequencing data.
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. Caporaso JG, et al. Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. Nat Methods. 2010. PMID: 20383131 Free PMC article. No abstract available.
Defining the human microbiome.
Ursell LK, Metcalf JL, Parfrey LW, Knight R. Ursell LK, et al. Nutr Rev. 2012 Aug;70 Suppl 1(Suppl 1):S38-44. doi: 10.1111/j.1753-4887.2012.00493.x. Nutr Rev. 2012. PMID: 22861806 Free PMC article. Review.
The gut microbiota in human energy homeostasis and obesity.
Rosenbaum M, Knight R, Leibel RL. Rosenbaum M, et al. Trends Endocrinol Metab. 2015 Sep;26(9):493-501. doi: 10.1016/j.tem.2015.07.002. Epub 2015 Aug 7. Trends Endocrinol Metab. 2015. PMID: 26257300 Free PMC article. Review.
Spatial and temporal variability of the human microbiota.
Parfrey LW, Knight R. Parfrey LW, et al. Clin Microbiol Infect. 2012 Jul;18 Suppl 4:8-11. doi: 10.1111/j.1469-0691.2012.03861.x. Clin Microbiol Infect. 2012. PMID: 22647040 Free article. Review.
Human oral, gut, and plaque microbiota in patients with atherosclerosis.
Koren O, Spor A, Felin J, Fåk F, Stombaugh J, Tremaroli V, Behre CJ, Knight R, Fagerberg B, Ley RE, Bäckhed F. Koren O, et al. Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1(Suppl 1):4592-8. doi: 10.1073/pnas.1011383107. Epub 2010 Oct 11. Proc Natl Acad Sci U S A. 2011. PMID: 20937873 Free PMC article.
19 results