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GLUE: a flexible software system for virus sequence data.
Singer JB, Thomson EC, McLauchlan J, Hughes J, Gifford RJ. Singer JB, et al. BMC Bioinformatics. 2018 Dec 18;19(1):532. doi: 10.1186/s12859-018-2459-9. BMC Bioinformatics. 2018. PMID: 30563445 Free PMC article.
Risk factors for human acute leptospirosis in northern Tanzania.
Maze MJ, Cash-Goldwasser S, Rubach MP, Biggs HM, Galloway RL, Sharples KJ, Allan KJ, Halliday JEB, Cleaveland S, Shand MC, Muiruri C, Kazwala RR, Saganda W, Lwezaula BF, Mmbaga BT, Maro VP, Crump JA. Maze MJ, et al. PLoS Negl Trop Dis. 2018 Jun 7;12(6):e0006372. doi: 10.1371/journal.pntd.0006372. eCollection 2018 Jun. PLoS Negl Trop Dis. 2018. PMID: 29879114 Free PMC article.
Assessment of animal hosts of pathogenic Leptospira in northern Tanzania.
Allan KJ, Halliday JEB, Moseley M, Carter RW, Ahmed A, Goris MGA, Hartskeerl RA, Keyyu J, Kibona T, Maro VP, Maze MJ, Mmbaga BT, Tarimo R, Crump JA, Cleaveland S. Allan KJ, et al. PLoS Negl Trop Dis. 2018 Jun 7;12(6):e0006444. doi: 10.1371/journal.pntd.0006444. eCollection 2018 Jun. PLoS Negl Trop Dis. 2018. PMID: 29879104 Free PMC article.
Interpreting Viral Deep Sequencing Data with GLUE.
Singer JB, Thomson EC, Hughes J, Aranday-Cortes E, McLauchlan J, da Silva Filipe A, Tong L, Manso CF, Gifford RJ, Robertson DL, Barnes E, Ansari MA, Mbisa JL, Bibby DF, Bradshaw D, Smith D. Singer JB, et al. Viruses. 2019 Apr 3;11(4):323. doi: 10.3390/v11040323. Viruses. 2019. PMID: 30987147 Free PMC article.
Highly Diverse Hepatitis C Strains Detected in Sub-Saharan Africa Have Unknown Susceptibility to Direct-Acting Antiviral Treatments.
Davis C, Mgomella GS, da Silva Filipe A, Frost EH, Giroux G, Hughes J, Hogan C, Kaleebu P, Asiki G, McLauchlan J, Niebel M, Ocama P, Pomila C, Pybus OG, Pépin J, Simmonds P, Singer JB, Sreenu VB, Wekesa C, Young EH, Murphy DG, Sandhu M, Thomson EC. Davis C, et al. Hepatology. 2019 Apr;69(4):1426-1441. doi: 10.1002/hep.30342. Epub 2019 Mar 22. Hepatology. 2019. PMID: 30387174 Free PMC article.