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Page 1
Modeling Oral-Esophageal Squamous Cell Carcinoma in 3D Organoids.
Flashner S, Martin C, Matsuura N, Shimonosono M, Tomita Y, Morimoto M, Okolo O, Yu VX, Parikh AS, Klein-Szanto AJP, Yan K, Gabre JT, Lu C, Momen-Heravi F, Rustgi AK, Nakagawa H. Flashner S, et al. J Vis Exp. 2022 Dec 23;(190):10.3791/64676. doi: 10.3791/64676. J Vis Exp. 2022. PMID: 36622034 Free PMC article.
pymgpipe: microbiome metabolic modeling in Python.
Meydan Y, Baldini F, Korem T. Meydan Y, et al. J Open Source Softw. 2023;8(88):5545. doi: 10.21105/joss.05545. Epub 2023 Aug 2. J Open Source Softw. 2023. PMID: 37885608 Free PMC article. No abstract available.
Microbiota metabolized Bile Acids accelerate Gastroesophageal Adenocarcinoma via FXR inhibition.
Baumeister T, Proaño-Vasco A, Metwaly A, Kleigrewe K, Kuznetsov A, Schömig L, Borgmann M, Khiat M, Anand A, Böttcher K, Haller D, Dunkel A, Somoza V, Reiter S, Meng C, Thimme R, Schmid RM, Patil DT, Burgermeister E, Huang Y, Sun Y, Wang HH, Wang TC, Abrams JA, Quante M. Baumeister T, et al. bioRxiv [Preprint]. 2024 Jun 12:2024.06.11.598405. doi: 10.1101/2024.06.11.598405. bioRxiv. 2024. PMID: 38915718 Free PMC article. Preprint.
Decreased Gut Microbiome Tryptophan Metabolism and Serotonergic Signaling in Patients With Persistent Mental Health and Gastrointestinal Symptoms After COVID-19.
Blackett JW, Sun Y, Purpura L, Margolis KG, Elkind MSV, O'Byrne S, Wainberg M, Abrams JA, Wang HH, Chang L, Freedberg DE. Blackett JW, et al. Clin Transl Gastroenterol. 2022 Oct 1;13(10):e00524. doi: 10.14309/ctg.0000000000000524. Clin Transl Gastroenterol. 2022. PMID: 36049050 Free PMC article. Clinical Trial.
Shifts in Serum Bile Acid Profiles Associated With Barrett's Esophagus and Stages of Progression to Esophageal Adenocarcinoma.
Kumar A, Gwalani P, Iyer PG, Wang KK, Falk GW, Ginsberg GG, Lightdale CJ, Del Portillo A, Lagana SM, Li Y, Li H, Genkinger J, Jin Z, Rustgi AK, Wang TC, Wang HH, Quante M, Abrams JA. Kumar A, et al. Clin Transl Gastroenterol. 2024 Oct 1;15(10):e1. doi: 10.14309/ctg.0000000000000762. Clin Transl Gastroenterol. 2024. PMID: 39166758 Free PMC article.
Molecular Analysis of Persistent and Recurrent Barrett's Esophagus in the Setting of Endoscopic Therapy.
Kumar A, Rara M, Yu M, Wen KW, Grady WM, Chak A, Iyer PG, Rustgi AK, Wang TC, Rubenstein JH, Liu Y, Kresty L, Westerhoff M, Kwon RS, Wamsteker E, Wang T, Berry L, Canto MI, Shaheen NJ, Wang KK, Abrams JA, Stachler MD. Kumar A, et al. Clin Transl Gastroenterol. 2024 Aug 1;15(8):e00751. doi: 10.14309/ctg.0000000000000751. Clin Transl Gastroenterol. 2024. PMID: 39007490 Free PMC article.