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2009 5
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Gene set enrichment analysis made simple.
Irizarry RA, Wang C, Zhou Y, Speed TP. Irizarry RA, et al. Stat Methods Med Res. 2009 Dec;18(6):565-75. doi: 10.1177/0962280209351908. Stat Methods Med Res. 2009. PMID: 20048385 Free PMC article.
Epigenetic memory in induced pluripotent stem cells.
Kim K, Doi A, Wen B, Ng K, Zhao R, Cahan P, Kim J, Aryee MJ, Ji H, Ehrlich LI, Yabuuchi A, Takeuchi A, Cunniff KC, Hongguang H, McKinney-Freeman S, Naveiras O, Yoon TJ, Irizarry RA, Jung N, Seita J, Hanna J, Murakami P, Jaenisch R, Weissleder R, Orkin SH, Weissman IL, Feinberg AP, Daley GQ. Kim K, et al. Nature. 2010 Sep 16;467(7313):285-90. doi: 10.1038/nature09342. Nature. 2010. PMID: 20644535 Free PMC article.
A framework for oligonucleotide microarray preprocessing.
Carvalho BS, Irizarry RA. Carvalho BS, et al. Bioinformatics. 2010 Oct 1;26(19):2363-7. doi: 10.1093/bioinformatics/btq431. Epub 2010 Aug 5. Bioinformatics. 2010. PMID: 20688976 Free PMC article.
Performance assessment of copy number microarray platforms using a spike-in experiment.
Halper-Stromberg E, Frelin L, Ruczinski I, Scharpf R, Jie C, Carvalho B, Hao H, Hetrick K, Jedlicka A, Dziedzic A, Doheny K, Scott AF, Baylin S, Pevsner J, Spencer F, Irizarry RA. Halper-Stromberg E, et al. Bioinformatics. 2011 Apr 15;27(8):1052-60. doi: 10.1093/bioinformatics/btr106. Bioinformatics. 2011. PMID: 21478196 Free PMC article.
Redefining CpG islands using hidden Markov models.
Wu H, Caffo B, Jaffee HA, Irizarry RA, Feinberg AP. Wu H, et al. Biostatistics. 2010 Jul;11(3):499-514. doi: 10.1093/biostatistics/kxq005. Epub 2010 Mar 8. Biostatistics. 2010. PMID: 20212320 Free PMC article.
22 results