R01 GM096454/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2011	2
2012	2
2014	1
2015	4
2016	2
2024	0

1

Interactions between RNA polymerase and the "core recognition element" counteract pausing.

Vvedenskaya IO, Vahedian-Movahed H, Bird JG, Knoblauch JG, Goldman SR, Zhang Y, Ebright RH, Nickels BE. Vvedenskaya IO, et al. Science. 2014 Jun 13;344(6189):1285-9. doi: 10.1126/science.1253458. Science. 2014. PMID: 24926020 Free PMC article.

2

NanoRNAs prime transcription initiation in vivo.

Goldman SR, Sharp JS, Vvedenskaya IO, Livny J, Dove SL, Nickels BE. Goldman SR, et al. Mol Cell. 2011 Jun 24;42(6):817-25. doi: 10.1016/j.molcel.2011.06.005. Mol Cell. 2011. PMID: 21700226 Free PMC article.

3

A new way to start: nanoRNA-mediated priming of transcription initiation.

Nickels BE. Nickels BE. Transcription. 2012 Nov-Dec;3(6):300-4. doi: 10.4161/trns.21903. Epub 2012 Nov 1. Transcription. 2012. PMID: 23117822 Free PMC article.

4

Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs.

Vvedenskaya IO, Sharp JS, Goldman SR, Kanabar PN, Livny J, Dove SL, Nickels BE. Vvedenskaya IO, et al. Genes Dev. 2012 Jul 1;26(13):1498-507. doi: 10.1101/gad.192732.112. Genes Dev. 2012. PMID: 22751503 Free PMC article.

5

NanoRNAs: a class of small RNAs that can prime transcription initiation in bacteria.

Nickels BE, Dove SL. Nickels BE, et al. J Mol Biol. 2011 Oct 7;412(5):772-81. doi: 10.1016/j.jmb.2011.06.015. Epub 2011 Jun 16. J Mol Biol. 2011. PMID: 21704045 Free PMC article.

6

Ubiquitous promoter-localization of essential virulence regulators in Francisella tularensis.

Ramsey KM, Osborne ML, Vvedenskaya IO, Su C, Nickels BE, Dove SL. Ramsey KM, et al. PLoS Pathog. 2015 Apr 1;11(4):e1004793. doi: 10.1371/journal.ppat.1004793. eCollection 2015 Apr. PLoS Pathog. 2015. PMID: 25830507 Free PMC article.

7

Massively Systematic Transcript End Readout, "MASTER": Transcription Start Site Selection, Transcriptional Slippage, and Transcript Yields.

Vvedenskaya IO, Zhang Y, Goldman SR, Valenti A, Visone V, Taylor DM, Ebright RH, Nickels BE. Vvedenskaya IO, et al. Mol Cell. 2015 Dec 17;60(6):953-65. doi: 10.1016/j.molcel.2015.10.029. Epub 2015 Nov 25. Mol Cell. 2015. PMID: 26626484 Free PMC article.

8

The mechanism of RNA 5′ capping with NAD+, NADH and desphospho-CoA.

Bird JG, Zhang Y, Tian Y, Panova N, Barvík I, Greene L, Liu M, Buckley B, Krásný L, Lee JK, Kaplan CD, Ebright RH, Nickels BE. Bird JG, et al. Nature. 2016 Jul 21;535(7612):444-7. doi: 10.1038/nature18622. Epub 2016 Jul 6. Nature. 2016. PMID: 27383794 Free PMC article.

9

Preparation of cDNA libraries for high-throughput RNA sequencing analysis of RNA 5' ends.

Vvedenskaya IO, Goldman SR, Nickels BE. Vvedenskaya IO, et al. Methods Mol Biol. 2015;1276:211-28. doi: 10.1007/978-1-4939-2392-2_12. Methods Mol Biol. 2015. PMID: 25665566 Free PMC article.

10

Interactions between RNA polymerase and the core recognition element are a determinant of transcription start site selection.

Vvedenskaya IO, Vahedian-Movahed H, Zhang Y, Taylor DM, Ebright RH, Nickels BE. Vvedenskaya IO, et al. Proc Natl Acad Sci U S A. 2016 May 24;113(21):E2899-905. doi: 10.1073/pnas.1603271113. Epub 2016 May 9. Proc Natl Acad Sci U S A. 2016. PMID: 27162333 Free PMC article.

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