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2006 6
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Page 1
Model-based analysis of ChIP-Seq (MACS).
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Zhang Y, et al. Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r137. Epub 2008 Sep 17. Genome Biol. 2008. PMID: 18798982 Free PMC article.
XBP1 promotes triple-negative breast cancer by controlling the HIF1α pathway.
Chen X, Iliopoulos D, Zhang Q, Tang Q, Greenblatt MB, Hatziapostolou M, Lim E, Tam WL, Ni M, Chen Y, Mai J, Shen H, Hu DZ, Adoro S, Hu B, Song M, Tan C, Landis MD, Ferrari M, Shin SJ, Brown M, Chang JC, Liu XS, Glimcher LH. Chen X, et al. Nature. 2014 Apr 3;508(7494):103-107. doi: 10.1038/nature13119. Epub 2014 Mar 23. Nature. 2014. PMID: 24670641 Free PMC article.
Computational methodology for ChIP-seq analysis.
Shin H, Liu T, Duan X, Zhang Y, Liu XS. Shin H, et al. Quant Biol. 2013 Mar 1;1(1):54-70. doi: 10.1007/s40484-013-0006-2. Quant Biol. 2013. PMID: 25741452 Free PMC article.
CistromeFinder for ChIP-seq and DNase-seq data reuse.
Sun H, Qin B, Liu T, Wang Q, Liu J, Wang J, Lin X, Yang Y, Taing L, Rao PK, Brown M, Zhang Y, Long HW, Liu XS. Sun H, et al. Bioinformatics. 2013 May 15;29(10):1352-4. doi: 10.1093/bioinformatics/btt135. Epub 2013 Mar 18. Bioinformatics. 2013. PMID: 23508969 Free PMC article.
Getting started in tiling microarray analysis.
Liu XS. Liu XS. PLoS Comput Biol. 2007 Oct;3(10):1842-4. doi: 10.1371/journal.pcbi.0030183. PLoS Comput Biol. 2007. PMID: 17967045 Free PMC article. Review. No abstract available.
Identifying ChIP-seq enrichment using MACS.
Feng J, Liu T, Qin B, Zhang Y, Liu XS. Feng J, et al. Nat Protoc. 2012 Sep;7(9):1728-40. doi: 10.1038/nprot.2012.101. Epub 2012 Aug 30. Nat Protoc. 2012. PMID: 22936215 Free PMC article.
66 results