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Tracing the origin of SARS-CoV-2 omicron-like spike sequences detected in an urban sewershed: a targeted, longitudinal surveillance study of a cryptic wastewater lineage.
Shafer MM, Bobholz MJ, Vuyk WC, Gregory DA, Roguet A, Haddock Soto LA, Rushford C, Janssen KH, Emmen IE, Ries HJ, Pilch HE, Mullen PA, Fahney RB, Wei W, Lambert M, Wenzel J, Halfmann P, Kawaoka Y, Wilson NA, Friedrich TC, Pray IW, Westergaard R, O'Connor DH, Johnson MC. Shafer MM, et al. Lancet Microbe. 2024 Apr;5(4):e335-e344. doi: 10.1016/S2666-5247(23)00372-5. Epub 2024 Mar 11. Lancet Microbe. 2024. PMID: 38484748 Free PMC article.
Where is the next SARS-CoV-2 variant of concern?
Dennehy JJ, Gupta RK, Hanage WP, Johnson MC, Peacock TP. Dennehy JJ, et al. Lancet. 2022 May 21;399(10339):1938-1939. doi: 10.1016/S0140-6736(22)00743-7. Lancet. 2022. PMID: 35598619 Free PMC article. No abstract available.
Biomarkers Selection for Population Normalization in SARS-CoV-2 Wastewater-based Epidemiology.
Hsu SY, Bayati MB, Li C, Hsieh HY, Belenchia A, Klutts J, Zemmer SA, Reynolds M, Semkiw E, Johnson HY, Foley T, Wieberg CG, Wenzel J, Johnson MC, Lin CH. Hsu SY, et al. medRxiv [Preprint]. 2022 Mar 15:2022.03.14.22272359. doi: 10.1101/2022.03.14.22272359. medRxiv. 2022. Update in: Water Res. 2022 Sep 1;223:118985. doi: 10.1016/j.watres.2022.118985 PMID: 35313587 Free PMC article. Updated. Preprint.
SARS-CoV-2 and other respiratory pathogens are detected in continuous air samples from congregate settings.
Ramuta MD, Newman CM, Brakefield SF, Stauss MR, Wiseman RW, Kita-Yarbro A, O'Connor EJ, Dahal N, Lim A, Poulsen KP, Safdar N, Marx JA, Accola MA, Rehrauer WM, Zimmer JA, Khubbar M, Beversdorf LJ, Boehm EC, Castañeda D, Rushford C, Gregory DA, Yao JD, Bhattacharyya S, Johnson MC, Aliota MT, Friedrich TC, O'Connor DH, O'Connor SL. Ramuta MD, et al. medRxiv [Preprint]. 2022 Mar 30:2022.03.29.22272716. doi: 10.1101/2022.03.29.22272716. medRxiv. 2022. Update in: Nat Commun. 2022 Aug 11;13(1):4717. doi: 10.1038/s41467-022-32406-w PMID: 35378751 Free PMC article. Updated. Preprint.
US National Institutes of Health Prioritization of SARS-CoV-2 Variants.
Turner S, Alisoltani A, Bratt D, Cohen-Lavi L, Dearlove BL, Drosten C, Fischer WM, Fouchier RAM, Gonzalez-Reiche AS, Jaroszewski L, Khalil Z, LeGresley E, Johnson M, Jones TC, Mühlemann B, O'Connor D, Sedova M, Shukla M, Theiler J, Wallace ZS, Yoon H, Zhang Y, van Bakel H, Degrace MM, Ghedin E, Godzik A, Hertz T, Korber B, Lemieux J, Niewiadomska AM, Post DJ, Rolland M, Scheuermann R, Smith DJ. Turner S, et al. Emerg Infect Dis. 2023 May;29(5):e221646. doi: 10.3201/eid2905.221646. Epub 2023 Apr 13. Emerg Infect Dis. 2023. PMID: 37054986 Free PMC article.
Tracking cryptic SARS-CoV-2 lineages detected in NYC wastewater.
Smyth DS, Trujillo M, Gregory DA, Cheung K, Gao A, Graham M, Guan Y, Guldenpfennig C, Hoxie I, Kannoly S, Kubota N, Lyddon TD, Markman M, Rushford C, San KM, Sompanya G, Spagnolo F, Suarez R, Teixeiro E, Daniels M, Johnson MC, Dennehy JJ. Smyth DS, et al. Nat Commun. 2022 Feb 3;13(1):635. doi: 10.1038/s41467-022-28246-3. Nat Commun. 2022. PMID: 35115523 Free PMC article.
SARS-CoV-2 and other respiratory pathogens are detected in continuous air samples from congregate settings.
Ramuta MD, Newman CM, Brakefield SF, Stauss MR, Wiseman RW, Kita-Yarbro A, O'Connor EJ, Dahal N, Lim A, Poulsen KP, Safdar N, Marx JA, Accola MA, Rehrauer WM, Zimmer JA, Khubbar M, Beversdorf LJ, Boehm EC, Castañeda D, Rushford C, Gregory DA, Yao JD, Bhattacharyya S, Johnson MC, Aliota MT, Friedrich TC, O'Connor DH, O'Connor SL. Ramuta MD, et al. Nat Commun. 2022 Aug 11;13(1):4717. doi: 10.1038/s41467-022-32406-w. Nat Commun. 2022. PMID: 35953484 Free PMC article.
Continued selection on cryptic SARS-CoV-2 observed in Missouri wastewater.
Gregory DA, Rushford C, Hunter T, Lin CH, Darby C, Niehues N, Semkiw E, Reynolds M, Wenzel J, Johnson MC. Gregory DA, et al. PLoS Pathog. 2023 Dec 28;19(12):e1011688. doi: 10.1371/journal.ppat.1011688. eCollection 2023 Dec. PLoS Pathog. 2023. PMID: 38153929 Free PMC article.
Genetic diversity and evolutionary convergence of cryptic SARS- CoV-2 lineages detected via wastewater sequencing.
Gregory DA, Trujillo M, Rushford C, Flury A, Kannoly S, San KM, Lyfoung DT, Wiseman RW, Bromert K, Zhou MY, Kesler E, Bivens NJ, Hoskins J, Lin CH, O'Connor DH, Wieberg C, Wenzel J, Kantor RS, Dennehy JJ, Johnson MC. Gregory DA, et al. PLoS Pathog. 2022 Oct 14;18(10):e1010636. doi: 10.1371/journal.ppat.1010636. eCollection 2022 Oct. PLoS Pathog. 2022. PMID: 36240259 Free PMC article.
15 results